| " Vim syntax file |
| " Language: AceDB model files |
| " Maintainer: Stewart Morris (Stewart.Morris@ed.ac.uk) |
| " Last change: Thu Apr 26 10:38:01 BST 2001 |
| " URL: http://www.ed.ac.uk/~swmorris/vim/acedb.vim |
| |
| " Syntax file to handle all $ACEDB/wspec/*.wrm files, primarily models.wrm |
| " AceDB software is available from http://www.acedb.org |
| |
| " For version 5.x: Clear all syntax items |
| " For version 6.x: Quit when a syntax file was already loaded |
| if version < 600 |
| syntax clear |
| elseif exists("b:current_syntax") |
| finish |
| endif |
| |
| syn keyword acedbXref XREF |
| syn keyword acedbModifier UNIQUE REPEAT |
| |
| syn case ignore |
| syn keyword acedbModifier Constraints |
| syn keyword acedbType DateType Int Text Float |
| |
| " Magic tags from: http://genome.cornell.edu/acedocs/magic/summary.html |
| syn keyword acedbMagic pick_me_to_call No_cache Non_graphic Title |
| syn keyword acedbMagic Flipped Centre Extent View Default_view |
| syn keyword acedbMagic From_map Minimal_view Main_Marker Map Includes |
| syn keyword acedbMagic Mapping_data More_data Position Ends Left Right |
| syn keyword acedbMagic Multi_Position Multi_Ends With Error Relative |
| syn keyword acedbMagic Min Anchor Gmap Grid_map Grid Submenus Cambridge |
| syn keyword acedbMagic No_buttons Columns Colour Surround_colour Tag |
| syn keyword acedbMagic Scale_unit Cursor Cursor_on Cursor_unit |
| syn keyword acedbMagic Locator Magnification Projection_lines_on |
| syn keyword acedbMagic Marker_points Marker_intervals Contigs |
| syn keyword acedbMagic Physical_genes Two_point Multi_point Likelihood |
| syn keyword acedbMagic Point_query Point_yellow Point_width |
| syn keyword acedbMagic Point_pne Point_pe Point_nne Point_ne |
| syn keyword acedbMagic Derived_tags DT_query DT_width DT_no_duplicates |
| syn keyword acedbMagic RH_data RH_query RH_spacing RH_show_all |
| syn keyword acedbMagic Names_on Width Symbol Colours Pne Pe Nne pMap |
| syn keyword acedbMagic Sequence Gridded FingerPrint In_Situ Cosmid_grid |
| syn keyword acedbMagic Layout Lines_at Space_at No_stagger A1_labelling |
| syn keyword acedbMagic DNA Structure From Source Source_Exons |
| syn keyword acedbMagic Coding CDS Transcript Assembly_tags Allele |
| syn keyword acedbMagic Display Colour Frame_sensitive Strand_sensitive |
| syn keyword acedbMagic Score_bounds Percent Bumpable Width Symbol |
| syn keyword acedbMagic Blixem_N Address E_mail Paper Reference Title |
| syn keyword acedbMagic Point_1 Point_2 Calculation Full One_recombinant |
| syn keyword acedbMagic Tested Selected_trans Backcross Back_one |
| syn keyword acedbMagic Dom_semi Dom_let Direct Complex_mixed Calc |
| syn keyword acedbMagic Calc_upper_conf Item_1 Item_2 Results A_non_B |
| syn keyword acedbMagic Score Score_by_offset Score_by_width |
| syn keyword acedbMagic Right_priority Blastn Blixem Blixem_X |
| syn keyword acedbMagic Journal Year Volume Page Author |
| syn keyword acedbMagic Selected One_all Recs_all One_let |
| syn keyword acedbMagic Sex_full Sex_one Sex_cis Dom_one Dom_selected |
| syn keyword acedbMagic Calc_distance Calc_lower_conf Canon_for_cosmid |
| syn keyword acedbMagic Reversed_physical Points Positive Negative |
| syn keyword acedbMagic Point_error_scale Point_segregate_ordered |
| syn keyword acedbMagic Point_symbol Interval_JTM Interval_RD |
| syn keyword acedbMagic EMBL_feature Homol Feature |
| syn keyword acedbMagic DT_tag Spacer Spacer_colour Spacer_width |
| syn keyword acedbMagic RH_positive RH_negative RH_contradictory Query |
| syn keyword acedbMagic Clone Y_remark PCR_remark Hybridizes_to |
| syn keyword acedbMagic Row Virtual_row Mixed In_pool Subpool B_non_A |
| syn keyword acedbMagic Interval_SRK Point_show_marginal Subsequence |
| syn keyword acedbMagic Visible Properties Transposon |
| |
| syn match acedbClass "^?\w\+\|^#\w\+" |
| syn match acedbComment "//.*" |
| syn region acedbComment start="/\*" end="\*/" |
| syn match acedbComment "^#\W.*" |
| syn match acedbHelp "^\*\*\w\+$" |
| syn match acedbTag "[^^]?\w\+\|[^^]#\w\+" |
| syn match acedbBlock "//#.\+#$" |
| syn match acedbOption "^_[DVH]\S\+" |
| syn match acedbFlag "\s\+-\h\+" |
| syn match acedbSubclass "^Class" |
| syn match acedbSubtag "^Visible\|^Is_a_subclass_of\|^Filter\|^Hidden" |
| syn match acedbNumber "\<\d\+\>" |
| syn match acedbNumber "\<\d\+\.\d\+\>" |
| syn match acedbHyb "\<Positive_\w\+\>\|\<Negative\w\+\>" |
| syn region acedbString start=/"/ end=/"/ skip=/\\"/ oneline |
| |
| " Rest of syntax highlighting rules start here |
| |
| " Define the default highlighting. |
| " For version 5.7 and earlier: only when not done already |
| " For version 5.8 and later: only when an item doesn't have highlighting yet |
| if version >= 508 || !exists("did_acedb_syn_inits") |
| if version < 508 |
| let did_acedb_syn_inits = 1 |
| command -nargs=+ HiLink hi link <args> |
| else |
| command -nargs=+ HiLink hi def link <args> |
| endif |
| |
| HiLink acedbMagic Special |
| HiLink acedbHyb Special |
| HiLink acedbType Type |
| HiLink acedbOption Type |
| HiLink acedbSubclass Type |
| HiLink acedbSubtag Include |
| HiLink acedbFlag Include |
| HiLink acedbTag Include |
| HiLink acedbClass Todo |
| HiLink acedbHelp Todo |
| HiLink acedbXref Identifier |
| HiLink acedbModifier Label |
| HiLink acedbComment Comment |
| HiLink acedbBlock ModeMsg |
| HiLink acedbNumber Number |
| HiLink acedbString String |
| |
| delcommand HiLink |
| endif |
| |
| let b:current_syntax = "acedb" |
| |
| " The structure of the model.wrm file is sensitive to mixed tab and space |
| " indentation and assumes tabs are 8 so... |
| se ts=8 |
