blob: 4ec51dc912f8b7b1b82e3e27a023cbc3933b70a4 [file] [log] [blame]
// R specific swig components
/*
Vectors
*/
%fragment("StdVectorTraits","header",fragment="StdSequenceTraits")
%{
namespace swig {
// vectors of doubles
template <>
struct traits_from_ptr<std::vector<double> > {
static SEXP from (std::vector<double > *val, int owner = 0) {
SEXP result;
PROTECT(result = Rf_allocVector(REALSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
NUMERIC_POINTER(result)[pos] = ((*val)[pos]);
}
UNPROTECT(1);
return(result);
}
};
// vectors of floats
template <>
struct traits_from_ptr<std::vector<float> > {
static SEXP from (std::vector<float > *val, int owner = 0) {
SEXP result;
PROTECT(result = Rf_allocVector(REALSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
NUMERIC_POINTER(result)[pos] = ((*val)[pos]);
}
UNPROTECT(1);
return(result);
}
};
// vectors of unsigned 8bit int
template <>
struct traits_from_ptr<std::vector<unsigned char> > {
static SEXP from (std::vector<unsigned char > *val, int owner = 0) {
SEXP result;
PROTECT(result = Rf_allocVector(INTSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
INTEGER_POINTER(result)[pos] = ((*val)[pos]);
}
UNPROTECT(1);
return(result);
}
};
// vectors of 8bit int
template <>
struct traits_from_ptr<std::vector<signed char> > {
static SEXP from (std::vector<signed char > *val, int owner = 0) {
SEXP result;
PROTECT(result = Rf_allocVector(INTSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
INTEGER_POINTER(result)[pos] = ((*val)[pos]);
}
UNPROTECT(1);
return(result);
}
};
// vectors of unsigned 16bit int
template <>
struct traits_from_ptr<std::vector<unsigned short int> > {
static SEXP from (std::vector<unsigned short int > *val, int owner = 0) {
SEXP result;
PROTECT(result = Rf_allocVector(INTSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
INTEGER_POINTER(result)[pos] = ((*val)[pos]);
}
UNPROTECT(1);
return(result);
}
};
// vectors of 16bit int
template <>
struct traits_from_ptr<std::vector<short int> > {
static SEXP from (std::vector<short int > *val, int owner = 0) {
SEXP result;
PROTECT(result = Rf_allocVector(INTSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
INTEGER_POINTER(result)[pos] = ((*val)[pos]);
}
UNPROTECT(1);
return(result);
}
};
// vectors of 32 bit unsigned int
template <>
struct traits_from_ptr<std::vector<unsigned int> > {
static SEXP from (std::vector<unsigned int> *val, int owner = 0) {
SEXP result;
PROTECT(result = Rf_allocVector(INTSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
INTEGER_POINTER(result)[pos] = ((*val)[pos]);
}
UNPROTECT(1);
return(result);
}
};
// vectors of 32bit int
template <>
struct traits_from_ptr<std::vector<int> > {
static SEXP from (std::vector<int > *val, int owner = 0) {
SEXP result;
PROTECT(result = Rf_allocVector(INTSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
INTEGER_POINTER(result)[pos] = ((*val)[pos]);
}
UNPROTECT(1);
return(result);
}
};
// vectors of 64 bit unsigned int
#if defined(SWIGWORDSIZE64)
template <>
struct traits_from_ptr<std::vector<unsigned long int> > {
static SEXP from (std::vector<unsigned long int> *val, int owner = 0) {
SEXP result;
PROTECT(result = Rf_allocVector(INTSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
INTEGER_POINTER(result)[pos] = ((*val)[pos]);
}
UNPROTECT(1);
return(result);
}
};
// vectors of 64 bit int
template <>
struct traits_from_ptr<std::vector<long int> > {
static SEXP from (std::vector<long int> *val, int owner = 0) {
SEXP result;
PROTECT(result = Rf_allocVector(INTSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
INTEGER_POINTER(result)[pos] = ((*val)[pos]);
}
UNPROTECT(1);
return(result);
}
};
#else
template <>
struct traits_from_ptr<std::vector<unsigned long long int> > {
static SEXP from (std::vector<unsigned long long int> *val, int owner = 0) {
SEXP result;
PROTECT(result = Rf_allocVector(INTSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
INTEGER_POINTER(result)[pos] = ((*val)[pos]);
}
UNPROTECT(1);
return(result);
}
};
// vectors of 64 bit int
template <>
struct traits_from_ptr<std::vector<long long int> > {
static SEXP from (std::vector<long long int> *val, int owner = 0) {
SEXP result;
PROTECT(result = Rf_allocVector(INTSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
INTEGER_POINTER(result)[pos] = ((*val)[pos]);
}
UNPROTECT(1);
return(result);
}
};
#endif
// vectors of bool
template <>
struct traits_from_ptr<std::vector<bool> > {
static SEXP from (std::vector<bool> *val, int owner = 0) {
SEXP result;
PROTECT(result = Rf_allocVector(LGLSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
LOGICAL_POINTER(result)[pos] = ((*val)[pos]);
}
UNPROTECT(1);
return(result);
}
};
// vectors of strings
template <>
struct traits_from_ptr<std::vector<std::basic_string<char> > > {
static SEXP from (std::vector<std::basic_string<char> > *val, int owner = 0) {
SEXP result;
PROTECT(result = Rf_allocVector(STRSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
CHARACTER_POINTER(result)[pos] = Rf_mkChar(((*val)[pos]).c_str());
}
UNPROTECT(1);
return(result);
}
};
// catch all that does everything with vectors
template <typename T>
struct traits_from_ptr< std::vector< T > > {
static SEXP from (std::vector< T > *val, int owner = 0) {
return SWIG_R_NewPointerObj(val, type_info< std::vector< T > >(), owner);
}
};
/////////////////////////////////////////////////
template <>
struct traits_asptr < std::vector<double> > {
static int asptr(SEXP obj, std::vector<double> **val) {
std::vector<double> *p;
// not sure how to check the size of the SEXP obj is correct
unsigned int sexpsz = Rf_length(obj);
p = new std::vector<double>(sexpsz);
double *S = NUMERIC_POINTER(obj);
for (unsigned pos = 0; pos < p->size(); pos++)
{
(*p)[pos] = static_cast<double>(S[pos]);
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
return res;
}
};
template <>
struct traits_asptr < std::vector<float> > {
static int asptr(SEXP obj, std::vector<float> **val) {
std::vector<float> *p;
// not sure how to check the size of the SEXP obj is correct
unsigned int sexpsz = Rf_length(obj);
p = new std::vector<float>(sexpsz);
double *S = NUMERIC_POINTER(obj);
for (unsigned pos = 0; pos < p->size(); pos++)
{
(*p)[pos] = static_cast<double>(S[pos]);
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
return res;
}
};
// 8 bit integer types
template <>
struct traits_asptr < std::vector<unsigned char> > {
static int asptr(SEXP obj, std::vector<unsigned char> **val) {
std::vector<unsigned char> *p;
unsigned int sexpsz = Rf_length(obj);
p = new std::vector<unsigned char>(sexpsz);
SEXP coerced;
PROTECT(coerced = Rf_coerceVector(obj, INTSXP));
int *S = INTEGER_POINTER(coerced);
for (unsigned pos = 0; pos < p->size(); pos++)
{
(*p)[pos] = static_cast<unsigned char>(S[pos]);
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
UNPROTECT(1);
return res;
}
};
template <>
struct traits_asptr < std::vector<signed char> > {
static int asptr(SEXP obj, std::vector<signed char> **val) {
std::vector<signed char> *p;
// not sure how to check the size of the SEXP obj is correct
int sexpsz = Rf_length(obj);
p = new std::vector<signed char>(sexpsz);
SEXP coerced;
PROTECT(coerced = Rf_coerceVector(obj, INTSXP));
int *S = INTEGER_POINTER(coerced);
for (unsigned pos = 0; pos < p->size(); pos++)
{
(*p)[pos] = static_cast<signed char>(S[pos]);
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
UNPROTECT(1);
return res;
}
};
// 16 bit integer types
template <>
struct traits_asptr < std::vector<unsigned short int> > {
static int asptr(SEXP obj, std::vector<unsigned short int> **val) {
std::vector<unsigned short int> *p;
unsigned int sexpsz = Rf_length(obj);
p = new std::vector<unsigned short int>(sexpsz);
SEXP coerced;
PROTECT(coerced = Rf_coerceVector(obj, INTSXP));
int *S = INTEGER_POINTER(coerced);
for (unsigned pos = 0; pos < p->size(); pos++)
{
(*p)[pos] = static_cast<unsigned short int>(S[pos]);
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
UNPROTECT(1);
return res;
}
};
template <>
struct traits_asptr < std::vector<short int> > {
static int asptr(SEXP obj, std::vector<short int> **val) {
std::vector<short int> *p;
// not sure how to check the size of the SEXP obj is correct
int sexpsz = Rf_length(obj);
p = new std::vector<short int>(sexpsz);
SEXP coerced;
PROTECT(coerced = Rf_coerceVector(obj, INTSXP));
int *S = INTEGER_POINTER(coerced);
for (unsigned pos = 0; pos < p->size(); pos++)
{
(*p)[pos] = static_cast<short int>(S[pos]);
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
UNPROTECT(1);
return res;
}
};
// 32 bit integer types
template <>
struct traits_asptr < std::vector<unsigned int> > {
static int asptr(SEXP obj, std::vector<unsigned int> **val) {
std::vector<unsigned int> *p;
unsigned int sexpsz = Rf_length(obj);
p = new std::vector<unsigned int>(sexpsz);
SEXP coerced;
PROTECT(coerced = Rf_coerceVector(obj, INTSXP));
int *S = INTEGER_POINTER(coerced);
for (unsigned pos = 0; pos < p->size(); pos++)
{
(*p)[pos] = static_cast<unsigned int>(S[pos]);
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
UNPROTECT(1);
return res;
}
};
template <>
struct traits_asptr < std::vector<int> > {
static int asptr(SEXP obj, std::vector<int> **val) {
std::vector<int> *p;
// not sure how to check the size of the SEXP obj is correct
int sexpsz = Rf_length(obj);
p = new std::vector<int>(sexpsz);
SEXP coerced;
PROTECT(coerced = Rf_coerceVector(obj, INTSXP));
int *S = INTEGER_POINTER(coerced);
for (unsigned pos = 0; pos < p->size(); pos++)
{
(*p)[pos] = static_cast<int>(S[pos]);
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
UNPROTECT(1);
return res;
}
};
#if defined(SWIGWORDSIZE64)
// 64 bit integer types
template <>
struct traits_asptr < std::vector<unsigned long int> > {
static int asptr(SEXP obj, std::vector<unsigned long int> **val) {
std::vector<unsigned long int> *p;
unsigned int sexpsz = Rf_length(obj);
p = new std::vector<unsigned long int>(sexpsz);
SEXP coerced;
PROTECT(coerced = Rf_coerceVector(obj, INTSXP));
int *S = INTEGER_POINTER(coerced);
for (unsigned pos = 0; pos < p->size(); pos++)
{
(*p)[pos] = static_cast<unsigned long int>(S[pos]);
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
UNPROTECT(1);
return res;
}
};
template <>
struct traits_asptr < std::vector<long int> > {
static int asptr(SEXP obj, std::vector<long int> **val) {
std::vector<long int> *p;
// not sure how to check the size of the SEXP obj is correct
int sexpsz = Rf_length(obj);
p = new std::vector<long int>(sexpsz);
SEXP coerced;
PROTECT(coerced = Rf_coerceVector(obj, INTSXP));
int *S = INTEGER_POINTER(coerced);
for (unsigned pos = 0; pos < p->size(); pos++)
{
(*p)[pos] = static_cast<long int>(S[pos]);
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
UNPROTECT(1);
return res;
}
};
#else
// 64 bit integer types
template <>
struct traits_asptr < std::vector<unsigned long long int> > {
static int asptr(SEXP obj, std::vector<unsigned long long int> **val) {
std::vector<unsigned long long int> *p;
unsigned int sexpsz = Rf_length(obj);
p = new std::vector<unsigned long long int>(sexpsz);
SEXP coerced;
PROTECT(coerced = Rf_coerceVector(obj, INTSXP));
int *S = INTEGER_POINTER(coerced);
for (unsigned pos = 0; pos < p->size(); pos++)
{
(*p)[pos] = static_cast<unsigned long long int>(S[pos]);
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
UNPROTECT(1);
return res;
}
};
template <>
struct traits_asptr < std::vector<long long int> > {
static int asptr(SEXP obj, std::vector<long long int> **val) {
std::vector<long long int> *p;
// not sure how to check the size of the SEXP obj is correct
int sexpsz = Rf_length(obj);
p = new std::vector<long long int>(sexpsz);
SEXP coerced;
PROTECT(coerced = Rf_coerceVector(obj, INTSXP));
int *S = INTEGER_POINTER(coerced);
for (unsigned pos = 0; pos < p->size(); pos++)
{
(*p)[pos] = static_cast<long long int>(S[pos]);
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
UNPROTECT(1);
return res;
}
};
#endif
template <>
struct traits_asptr < std::vector<bool> > {
static int asptr(SEXP obj, std::vector<bool> **val) {
std::vector<bool> *p;
// not sure how to check the size of the SEXP obj is correct
int sexpsz = Rf_length(obj);
p = new std::vector<bool>(sexpsz);
SEXP coerced;
PROTECT(coerced = Rf_coerceVector(obj, LGLSXP));
int *S = LOGICAL_POINTER(coerced);
for (unsigned pos = 0; pos < p->size(); pos++)
{
(*p)[pos] = static_cast<bool>(S[pos]);
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
UNPROTECT(1);
return res;
}
};
template <>
struct traits_asptr < std::vector<std::basic_string<char> > > {
static int asptr(SEXP obj, std::vector<std::basic_string<char> > **val) {
std::vector<std::basic_string<char> > *p;
// R character vectors are STRSXP containing CHARSXP
// access a CHARSXP using STRING_ELT
int sexpsz = Rf_length(obj);
p = new std::vector<std::basic_string<char> >(sexpsz);
SEXP coerced;
PROTECT(coerced = Rf_coerceVector(obj, STRSXP));
//SEXP *S = CHARACTER_POINTER(coerced);
for (unsigned pos = 0; pos < p->size(); pos++)
{
const char * thecstring = CHAR(STRING_ELT(coerced, pos));
(*p)[pos] = std::basic_string<char>(thecstring);
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
UNPROTECT(1);
return res;
}
};
// catchall for R to vector conversion
template <typename T>
struct traits_asptr < std::vector<T> > {
static int asptr(SEXP obj, std::vector<T> **val) {
std::vector<T> *p;
int res = SWIG_R_ConvertPtr(obj, (void**)&p, type_info< std::vector<T> >(), 0);
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
return res;
}
};
// now for vectors of vectors. These will be represented as lists of vectors on the
// catch all that does everything with vectors
template <>
struct traits_from_ptr<std::vector<std::vector<unsigned int> > > {
static SEXP from (std::vector< std::vector<unsigned int> > *val, int owner = 0) {
SEXP result;
// allocate the R list
PROTECT(result = Rf_allocVector(VECSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
// allocate the R vector
SET_VECTOR_ELT(result, pos, Rf_allocVector(INTSXP, val->at(pos).size()));
// Fill the R vector
for (unsigned vpos = 0; vpos < val->at(pos).size(); ++vpos)
{
INTEGER_POINTER(VECTOR_ELT(result, pos))[vpos] = static_cast<int>(val->at(pos).at(vpos));
}
}
UNPROTECT(1);
return(result);
}
};
template <>
struct traits_from_ptr<std::vector<std::vector<int> > > {
static SEXP from (std::vector< std::vector<int > > *val, int owner = 0) {
SEXP result;
// allocate the R list
PROTECT(result = Rf_allocVector(VECSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
// allocate the R vector
SET_VECTOR_ELT(result, pos, Rf_allocVector(INTSXP, val->at(pos).size()));
// Fill the R vector
for (unsigned vpos = 0; vpos < val->at(pos).size(); ++vpos)
{
INTEGER_POINTER(VECTOR_ELT(result, pos))[vpos] = static_cast<int>(val->at(pos).at(vpos));
}
}
UNPROTECT(1);
return(result);
}
};
template <>
struct traits_from_ptr<std::vector<std::vector<float> > > {
static SEXP from (std::vector< std::vector<float > > *val, int owner = 0) {
SEXP result;
// allocate the R list
PROTECT(result = Rf_allocVector(VECSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
// allocate the R vector
SET_VECTOR_ELT(result, pos, Rf_allocVector(REALSXP, val->at(pos).size()));
// Fill the R vector
for (unsigned vpos = 0; vpos < val->at(pos).size(); ++vpos)
{
NUMERIC_POINTER(VECTOR_ELT(result, pos))[vpos] = static_cast<double>(val->at(pos).at(vpos));
}
}
UNPROTECT(1);
return(result);
}
};
template <>
struct traits_from_ptr<std::vector<std::vector<double> > > {
static SEXP from (std::vector< std::vector<double > > *val, int owner = 0) {
SEXP result;
// allocate the R list
PROTECT(result = Rf_allocVector(VECSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
// allocate the R vector
SET_VECTOR_ELT(result, pos, Rf_allocVector(REALSXP, val->at(pos).size()));
// Fill the R vector
for (unsigned vpos = 0; vpos < val->at(pos).size(); ++vpos)
{
NUMERIC_POINTER(VECTOR_ELT(result, pos))[vpos] = static_cast<double>(val->at(pos).at(vpos));
}
}
UNPROTECT(1);
return(result);
}
};
template <>
struct traits_from_ptr<std::vector<std::vector<bool> > > {
static SEXP from (std::vector< std::vector<bool> > *val, int owner = 0) {
SEXP result;
// allocate the R list
PROTECT(result = Rf_allocVector(VECSXP, val->size()));
for (unsigned pos = 0; pos < val->size(); pos++)
{
// allocate the R vector
SET_VECTOR_ELT(result, pos, Rf_allocVector(LGLSXP, val->at(pos).size()));
// Fill the R vector
for (unsigned vpos = 0; vpos < val->at(pos).size(); ++vpos)
{
LOGICAL_POINTER(VECTOR_ELT(result, pos))[vpos] = (val->at(pos).at(vpos));
}
}
UNPROTECT(1);
return(result);
}
};
template <typename T>
struct traits_from_ptr< std::vector < std::vector< T > > > {
static SEXP from (std::vector < std::vector< T > > *val, int owner = 0) {
return SWIG_R_NewPointerObj(val, type_info< std::vector < std::vector< T > > >(), owner);
}
};
/////////////////////////////////////////////////////////////////
// R side
template <>
struct traits_asptr < std::vector< std::vector<unsigned int> > > {
static int asptr(SEXP obj, std::vector< std::vector<unsigned int> > **val) {
std::vector <std::vector<unsigned int> > *p;
// this is the length of the list
unsigned int sexpsz = Rf_length(obj);
p = new std::vector< std::vector<unsigned int> > (sexpsz);
for (unsigned listpos = 0; listpos < sexpsz; ++listpos)
{
unsigned vecsize = Rf_length(VECTOR_ELT(obj, listpos));
for (unsigned vpos = 0; vpos < vecsize; ++vpos)
{
(*p)[listpos].push_back(static_cast<int>(INTEGER_POINTER(VECTOR_ELT(obj, listpos))[vpos]));
}
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
return res;
}
};
template <>
struct traits_asptr < std::vector< std::vector< int> > > {
static int asptr(SEXP obj, std::vector< std::vector< int> > **val) {
std::vector <std::vector< int> > *p;
// this is the length of the list
unsigned int sexpsz = Rf_length(obj);
p = new std::vector< std::vector< int> > (sexpsz);
for (unsigned listpos = 0; listpos < sexpsz; ++listpos)
{
unsigned vecsize = Rf_length(VECTOR_ELT(obj, listpos));
for (unsigned vpos = 0; vpos < vecsize; ++vpos)
{
(*p)[listpos].push_back(static_cast<int>(INTEGER_POINTER(VECTOR_ELT(obj, listpos))[vpos]));
}
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
return res;
}
};
template <>
struct traits_asptr < std::vector< std::vector< float> > > {
static int asptr(SEXP obj, std::vector< std::vector< float> > **val) {
std::vector <std::vector< float> > *p;
// this is the length of the list
unsigned int sexpsz = Rf_length(obj);
p = new std::vector< std::vector< float> > (sexpsz);
for (unsigned listpos = 0; listpos < sexpsz; ++listpos)
{
unsigned vecsize = Rf_length(VECTOR_ELT(obj, listpos));
for (unsigned vpos = 0; vpos < vecsize; ++vpos)
{
(*p)[listpos].push_back(static_cast<float>(NUMERIC_POINTER(VECTOR_ELT(obj, listpos))[vpos]));
}
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
return res;
}
};
template <>
struct traits_asptr < std::vector< std::vector< double> > > {
static int asptr(SEXP obj, std::vector< std::vector< double> > **val) {
std::vector <std::vector< double> > *p;
// this is the length of the list
unsigned int sexpsz = Rf_length(obj);
p = new std::vector< std::vector< double> > (sexpsz);
for (unsigned listpos = 0; listpos < sexpsz; ++listpos)
{
unsigned vecsize = Rf_length(VECTOR_ELT(obj, listpos));
for (unsigned vpos = 0; vpos < vecsize; ++vpos)
{
(*p)[listpos].push_back(static_cast<double>(NUMERIC_POINTER(VECTOR_ELT(obj, listpos))[vpos]));
}
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
return res;
}
};
template <>
struct traits_asptr < std::vector< std::vector< bool > > > {
static int asptr(SEXP obj, std::vector< std::vector< bool> > **val) {
std::vector <std::vector< bool > > *p;
// this is the length of the list
unsigned int sexpsz = Rf_length(obj);
p = new std::vector< std::vector< bool > > (sexpsz);
for (unsigned listpos = 0; listpos < sexpsz; ++listpos)
{
unsigned vecsize = Rf_length(VECTOR_ELT(obj, listpos));
for (unsigned vpos = 0; vpos < vecsize; ++vpos)
{
(*p)[listpos].push_back(static_cast<bool>(LOGICAL_POINTER(VECTOR_ELT(obj, listpos))[vpos]));
}
}
int res = SWIG_OK;
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
return res;
}
};
// catchall
template <typename T>
struct traits_asptr < std::vector< std::vector<T> > > {
static int asptr(SEXP obj, std::vector< std::vector<T> > **val) {
std::vector< std::vector<T> > *p;
Rprintf("vector of vectors - unsupported content\n");
int res = SWIG_R_ConvertPtr(obj, (void**)&p, type_info< std::vector< std::vector<T> > > (), 0);
if (SWIG_IsOK(res)) {
if (val) *val = p;
}
return res;
}
};
}
%}
#define %swig_vector_methods(Type...) %swig_sequence_methods(Type)
#define %swig_vector_methods_val(Type...) %swig_sequence_methods_val(Type);
%define %traits_type_name(Type...)
%fragment(SWIG_Traits_frag(Type), "header",
fragment="StdTraits",fragment="StdVectorTraits") {
namespace swig {
template <> struct traits< Type > {
typedef pointer_category category;
static const char* type_name() {
return #Type;
}
};
}
}
%enddef
%include <std/std_vector.i>
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<double>)
%traits_type_name(std::vector<double>)
%typemap("rtypecheck") std::vector<double>, std::vector<double> *, std::vector<double> &
%{ is.numeric($arg) %}
%typemap("rtype") std::vector<double> "numeric"
%typemap("scoercein") std::vector<double>, std::vector<double> *, std::vector<double> & "$input = as.numeric($input);";
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<float>)
%traits_type_name(std::vector<float>)
// reuse these for float
%typemap("rtype") std::vector<float>, std::vector<float> *, std::vector<float> & = std::vector<double>;
%typemap("rtypecheck") std::vector<float>, std::vector<float> *, std::vector<float> & = std::vector<double>;
%typemap("scoercein") std::vector<float>, std::vector<float> *, std::vector<float> & = std::vector<double>;
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<bool>);
%traits_type_name(std::vector<bool>);
%typemap("rtypecheck") std::vector<bool>, std::vector<bool> *, std::vector<bool> &
%{ is.logical($arg) %}
%typemap("rtype") std::vector<bool> "logical"
%typemap("scoercein") std::vector<bool> , std::vector<bool> & "$input = as.logical($input);";
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<int>);
%traits_type_name(std::vector<int>);
%typemap("rtypecheck") std::vector<int>, std::vector<int> *, std::vector<int> &
%{ is.integer($arg) || is.numeric($arg) %}
%typemap("rtype") std::vector<int> "integer"
%typemap("scoercein") std::vector<int> , std::vector<int> *, std::vector<int> & "$input = as.integer($input);";
// strings
%typemap("rtype") std::vector< std::basic_string<char> >,
std::vector< std::basic_string<char> > *,
std::vector< std::basic_string<char> > & "character"
%typemap("rtypecheck") std::vector< std::basic_string<char> >,
std::vector< std::basic_string<char> > *,
std::vector< std::basic_string<char> > &
%{ is.character($arg) %}
%typemap("scoercein") std::vector< std::basic_string<char> >,
std::vector< std::basic_string<char> > *,
std::vector< std::basic_string<char> > & "$input = as.character($input);";
%typemap("scoerceout") std::vector< std::basic_string<char> >,
std::vector< std::basic_string<char> > *,
std::vector< std::basic_string<char> > &
%{ %}
%apply std::vector< std::basic_string<char> > { std::vector< std::string> };
// all the related integer vectors
// signed
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<signed char>);
%traits_type_name(std::vector<signed char>);
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<signed short>);
%traits_type_name(std::vector<signed short>);
#if defined(SWIGWORDSIZE64)
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<long int>);
%traits_type_name(std::vector<long int>);
#else
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<long long int>);
%traits_type_name(std::vector<long long int>);
#endif
// unsigned
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<unsigned char>);
%traits_type_name(std::vector<unsigned char>);
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<unsigned short>);
%traits_type_name(std::vector<unsigned short>);
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<unsigned int>);
%traits_type_name(std::vector<unsigned int>);
#if defined(SWIGWORDSIZE64)
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<unsigned long int>);
%traits_type_name(std::vector<unsigned long int>);
#else
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<unsigned long long int>);
%traits_type_name(std::vector<unsigned long long int>);
#endif
// These R side typemaps are common for integer types
// but we can't use %apply as it will copy the C side ones too
// Also note that we don't seem to be able to use types like
// int_least8_t here.
%typemap("rtype") std::vector<signed char>, std::vector<signed char> *, std::vector<signed char> & = std::vector<int>;
%typemap("rtype") std::vector<signed short>, std::vector<signed short> *, std::vector<signed short> & = std::vector<int>;
%typemap("rtype") std::vector<unsigned char>, std::vector<unsigned char> *, std::vector<unsigned char> & = std::vector<int>;
%typemap("rtype") std::vector<unsigned int>, std::vector<unsigned int> *, std::vector<unsigned int> & = std::vector<int>;
#if defined(SWIGWORDSIZE64)
%typemap("rtype") std::vector<long int>, std::vector<long int> *, std::vector<long int> & = std::vector<int>;
%typemap("rtype") std::vector<unsigned long int>, std::vector<unsigned long int> *, std::vector<unsigned long int> & = std::vector<int>;
#else
%typemap("rtype") std::vector<long long int>, std::vector<long long int> *, std::vector<long long int> & = std::vector<int>;
%typemap("rtype") std::vector<unsigned long long int>, std::vector<unsigned long long int> *, std::vector<unsigned long long int> & = std::vector<int>;
#endif
%typemap("scoercein") std::vector<signed char>, std::vector<signed char> *, std::vector<signed char> & = std::vector<int>;
%typemap("scoercein") std::vector<signed short>, std::vector<signed short> *, std::vector<signed short> & = std::vector<int>;
%typemap("scoercein") std::vector<unsigned char>, std::vector<unsigned char> *, std::vector<unsigned char> & = std::vector<int>;
%typemap("scoercein") std::vector<unsigned int>, std::vector<unsigned int> *, std::vector<unsigned int> & = std::vector<int>;
#if defined(SWIGWORDSIZE64)
%typemap("scoercein") std::vector<long int>, std::vector<long int> *, std::vector<long int> & = std::vector<int>;
%typemap("scoercein") std::vector<unsigned long int>, std::vector<unsigned long int> *, std::vector<unsigned long int> & = std::vector<int>;
#else
%typemap("scoercein") std::vector<long long int>, std::vector<long long int> *, std::vector<long long int> & = std::vector<int>;
%typemap("scoercein") std::vector<unsigned long long int>, std::vector<unsigned long long int> *, std::vector<unsigned long long int> & = std::vector<int>;
#endif
%typemap("rtypecheck") std::vector<signed char>, std::vector<signed char> *, std::vector<signed char> & = std::vector<int>;
%typemap("rtypecheck") std::vector<signed short>, std::vector<signed short> *, std::vector<signed short> & = std::vector<int>;
%typemap("rtypecheck") std::vector<unsigned char>, std::vector<unsigned char> *, std::vector<unsigned char> & = std::vector<int>;
%typemap("rtypecheck") std::vector<unsigned int>, std::vector<unsigned int> *, std::vector<unsigned int> & = std::vector<int>;
#if defined(SWIGWORDSIZE64)
%typemap("rtypecheck") std::vector<long int>, std::vector<long int> *, std::vector<long int> & = std::vector<int>;
%typemap("rtypecheck") std::vector<unsigned long int>, std::vector<unsigned long int> *, std::vector<unsigned long int> & = std::vector<int>;
#else
%typemap("rtypecheck") std::vector<long long int>, std::vector<long long int> *, std::vector<long long int> & = std::vector<int>;
%typemap("rtypecheck") std::vector<unsigned long long int>, std::vector<unsigned long long int> *, std::vector<unsigned long long int> & = std::vector<int>;
#endif
///////////////////////////////////////////////////////////////
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<std::vector<int> >);
%traits_type_name(std::vector< std::vector<int> >);
%typemap("rtypecheck") std::vector<std::vector<int> >, std::vector<std::vector<int> > *, std::vector<std::vector<int> > &
%{ is.list($arg) && all(sapply($arg , is.integer) || sapply($arg, is.numeric)) %}
%typemap("rtype") std::vector<std::vector<int> >, std::vector<std::vector<int> > *, std::vector<std::vector<int> > & "list"
%typemap("scoercein") std::vector< std::vector<int> >, std::vector<std::vector<int> > *, std::vector<std::vector<int> > & "$input = lapply($input, as.integer);";
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<std::vector<unsigned int> >);
%traits_type_name(std::vector< std::vector<unsigned int> >);
%typemap("rtypecheck") std::vector<std::vector<unsigned int> >, std::vector<std::vector<unsigned int> > *, std::vector<std::vector<unsigned int> > &
%{ is.list($arg) && all(sapply($arg , is.integer) || sapply($arg, is.numeric)) %}
%typemap("rtype") std::vector<std::vector<unsigned int> >, std::vector<std::vector<unsigned int> > *, std::vector<std::vector<unsigned int> > & "list"
%typemap("scoercein") std::vector< std::vector<unsigned int> >, std::vector<std::vector<int> > *, std::vector<std::vector<unsigned int> > & "$input = lapply($input, as.integer);";
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<std::vector<float> >);
%traits_type_name(std::vector< std::vector<float> >);
%typemap("rtypecheck") std::vector<std::vector<float> >, std::vector<std::vector<float> > *, std::vector<std::vector<float> > &
%{ is.list($arg) && all(sapply($arg , is.integer) || sapply($arg, is.numeric)) %}
%typemap("rtype") std::vector<std::vector<float> >, std::vector<std::vector<float> > *, std::vector<std::vector<float> > "list"
%typemap("scoercein") std::vector< std::vector<float> >, std::vector<std::vector<float> > *, std::vector<std::vector<float> > & "$input = lapply($input, as.numeric);";
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<std::vector<double> >);
%traits_type_name(std::vector< std::vector<double> >);
%typemap("rtypecheck") std::vector<std::vector<double> >, std::vector<std::vector<double> > *, std::vector<std::vector<double> > &
%{ is.list($arg) && all(sapply($arg , is.integer) || sapply($arg, is.numeric)) %}
%typemap("rtype") std::vector<std::vector<double> >, std::vector<std::vector<double> > *, std::vector<std::vector<double> > & "list"
%typemap("scoercein") std::vector< std::vector<double> >, std::vector<std::vector<double> > *, std::vector<std::vector<double> > &
"$input = lapply($input, as.numeric);";
%typemap_traits_ptr(SWIG_TYPECHECK_VECTOR, std::vector<std::vector<bool> >);
%traits_type_name(std::vector< std::vector<bool> >);
%typemap("rtypecheck") std::vector<std::vector<bool> >, std::vector<std::vector<bool> > *, std::vector<std::vector<bool> > &
%{ is.list($arg) && all(sapply($arg , is.integer) || sapply($arg, is.numeric)) %}
%typemap("rtype") std::vector<std::vector<bool> >, std::vector<std::vector<bool> > *, std::vector<std::vector<bool> > & "list"
%typemap("scoercein") std::vector< std::vector<bool> >, std::vector<std::vector<bool> > *, std::vector<std::vector<bool> > & "$input = lapply($input, as.logical);";
// we don't want these to be given R classes as they
// have already been turned into R vectors.
%typemap(scoerceout) std::vector<double>,
std::vector<double>*,
std::vector<double>&,
std::vector<float> ,
std::vector<float>*,
std::vector<float> ,
std::vector<signed char>,
std::vector<signed char>*,
std::vector<signed char>&,
std::vector<signed short>,
std::vector<signed short>*,
std::vector<signed short>&,
std::vector<int>,
std::vector<int>*,
std::vector<int>&,
std::vector<unsigned char>,
std::vector<unsigned char>*,
std::vector<unsigned char>&,
std::vector<unsigned short>,
std::vector<unsigned short>*,
std::vector<unsigned short>&,
std::vector<unsigned int>,
std::vector<unsigned int>*,
std::vector<unsigned int>&,
std::vector<bool>,
std::vector<bool>*,
std::vector<bool>&,
// vectors of vectors
std::vector< std::vector<unsigned int> >,
std::vector< std::vector<unsigned int> >*,
std::vector< std::vector<unsigned int> >&,
std::vector< std::vector<int> >,
std::vector< std::vector<int> >*,
std::vector< std::vector<int> >&,
std::vector< std::vector<float> >,
std::vector< std::vector<float> >*,
std::vector< std::vector<float> >&,
std::vector< std::vector<double> >,
std::vector< std::vector<double> >*,
std::vector< std::vector<double> >&,
std::vector< std::vector<bool> >,
std::vector< std::vector<bool> >*,
std::vector< std::vector<bool> >&
%{ %}
#if defined(SWIGWORDSIZE64)
%typemap(scoerceout) std::vector<long int>,
std::vector<long int>*,
std::vector<long int>&,
std::vector<unsigned long int>,
std::vector<unsigned long int>*,
std::vector<unsigned long int>&
%{ %}
#else
%typemap(scoerceout) std::vector<long long int>,
std::vector<long long int>*,
std::vector<long long int>&,
std::vector<unsigned long long int>,
std::vector<unsigned long long int>*,
std::vector<unsigned long long int>&
%{ %}
#endif