| list(APPEND LDFLAGS -lm) |
| |
| macro(test_input run_type input output) |
| # The benchmark modifies the data file, need to copy a fresh one |
| llvm_test_prepare(RUN_TYPE ${run_type} WORKDIR ${CMAKE_CURRENT_BINARY_DIR} |
| cp -f data/${run_type}/input/${input} ${input} |
| ) |
| llvm_test_run(RUN_TYPE ${run_type} WORKDIR ${CMAKE_CURRENT_BINARY_DIR} |
| ${ARGN} ${input} > ${output} |
| ) |
| llvm_test_verify(RUN_TYPE ${run_type} WORKDIR ${CMAKE_CURRENT_BINARY_DIR} |
| ${FPCMP} -r 0.002 -a 0.00001 data/${run_type}/output/${output} ${output} |
| ) |
| endmacro() |
| |
| test_input(test bombesin.hmm bombesin.out |
| --fixed 0 --mean 325 --num 45000 --sd 200 --seed 0 |
| ) |
| test_input(train leng100.hmm leng100.out |
| --fixed 0 --mean 425 --num 85000 --sd 300 --seed 0 |
| ) |
| # Copy nph3.hmm as well |
| llvm_test_prepare(RUN_TYPE ref WORKDIR ${CMAKE_CURRENT_BINARY_DIR} |
| cp -f data/ref/input/nph3.hmm nph3.hmm |
| ) |
| test_input(ref swiss41 nph3.out |
| nph3.hmm |
| ) |
| test_input(ref retro.hmm retro.out |
| --fixed 0 --mean 500 --num 500000 --sd 350 --seed 0 |
| ) |
| |
| llvm_test_executable(456.hmmer ${Source}) |
| llvm_test_data_spec_default(456.hmmer) |