| // Code generated by protoc-gen-go. DO NOT EDIT. |
| // source: google/genomics/v1/reads.proto |
| |
| package genomics |
| |
| import ( |
| context "context" |
| fmt "fmt" |
| math "math" |
| |
| proto "github.com/golang/protobuf/proto" |
| empty "github.com/golang/protobuf/ptypes/empty" |
| _ "google.golang.org/genproto/googleapis/api/annotations" |
| longrunning "google.golang.org/genproto/googleapis/longrunning" |
| field_mask "google.golang.org/genproto/protobuf/field_mask" |
| grpc "google.golang.org/grpc" |
| codes "google.golang.org/grpc/codes" |
| status "google.golang.org/grpc/status" |
| ) |
| |
| // Reference imports to suppress errors if they are not otherwise used. |
| var _ = proto.Marshal |
| var _ = fmt.Errorf |
| var _ = math.Inf |
| |
| // This is a compile-time assertion to ensure that this generated file |
| // is compatible with the proto package it is being compiled against. |
| // A compilation error at this line likely means your copy of the |
| // proto package needs to be updated. |
| const _ = proto.ProtoPackageIsVersion3 // please upgrade the proto package |
| |
| type ImportReadGroupSetsRequest_PartitionStrategy int32 |
| |
| const ( |
| ImportReadGroupSetsRequest_PARTITION_STRATEGY_UNSPECIFIED ImportReadGroupSetsRequest_PartitionStrategy = 0 |
| // In most cases, this strategy yields one read group set per file. This is |
| // the default behavior. |
| // |
| // Allocate one read group set per file per sample. For BAM files, read |
| // groups are considered to share a sample if they have identical sample |
| // names. Furthermore, all reads for each file which do not belong to a read |
| // group, if any, will be grouped into a single read group set per-file. |
| ImportReadGroupSetsRequest_PER_FILE_PER_SAMPLE ImportReadGroupSetsRequest_PartitionStrategy = 1 |
| // Includes all read groups in all imported files into a single read group |
| // set. Requires that the headers for all imported files are equivalent. All |
| // reads which do not belong to a read group, if any, will be grouped into a |
| // separate read group set. |
| ImportReadGroupSetsRequest_MERGE_ALL ImportReadGroupSetsRequest_PartitionStrategy = 2 |
| ) |
| |
| var ImportReadGroupSetsRequest_PartitionStrategy_name = map[int32]string{ |
| 0: "PARTITION_STRATEGY_UNSPECIFIED", |
| 1: "PER_FILE_PER_SAMPLE", |
| 2: "MERGE_ALL", |
| } |
| |
| var ImportReadGroupSetsRequest_PartitionStrategy_value = map[string]int32{ |
| "PARTITION_STRATEGY_UNSPECIFIED": 0, |
| "PER_FILE_PER_SAMPLE": 1, |
| "MERGE_ALL": 2, |
| } |
| |
| func (x ImportReadGroupSetsRequest_PartitionStrategy) String() string { |
| return proto.EnumName(ImportReadGroupSetsRequest_PartitionStrategy_name, int32(x)) |
| } |
| |
| func (ImportReadGroupSetsRequest_PartitionStrategy) EnumDescriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{2, 0} |
| } |
| |
| // The read group set search request. |
| type SearchReadGroupSetsRequest struct { |
| // Restricts this query to read group sets within the given datasets. At least |
| // one ID must be provided. |
| DatasetIds []string `protobuf:"bytes,1,rep,name=dataset_ids,json=datasetIds,proto3" json:"dataset_ids,omitempty"` |
| // Only return read group sets for which a substring of the name matches this |
| // string. |
| Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"` |
| // The continuation token, which is used to page through large result sets. |
| // To get the next page of results, set this parameter to the value of |
| // `nextPageToken` from the previous response. |
| PageToken string `protobuf:"bytes,2,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"` |
| // The maximum number of results to return in a single page. If unspecified, |
| // defaults to 256. The maximum value is 1024. |
| PageSize int32 `protobuf:"varint,4,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *SearchReadGroupSetsRequest) Reset() { *m = SearchReadGroupSetsRequest{} } |
| func (m *SearchReadGroupSetsRequest) String() string { return proto.CompactTextString(m) } |
| func (*SearchReadGroupSetsRequest) ProtoMessage() {} |
| func (*SearchReadGroupSetsRequest) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{0} |
| } |
| |
| func (m *SearchReadGroupSetsRequest) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_SearchReadGroupSetsRequest.Unmarshal(m, b) |
| } |
| func (m *SearchReadGroupSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_SearchReadGroupSetsRequest.Marshal(b, m, deterministic) |
| } |
| func (m *SearchReadGroupSetsRequest) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_SearchReadGroupSetsRequest.Merge(m, src) |
| } |
| func (m *SearchReadGroupSetsRequest) XXX_Size() int { |
| return xxx_messageInfo_SearchReadGroupSetsRequest.Size(m) |
| } |
| func (m *SearchReadGroupSetsRequest) XXX_DiscardUnknown() { |
| xxx_messageInfo_SearchReadGroupSetsRequest.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_SearchReadGroupSetsRequest proto.InternalMessageInfo |
| |
| func (m *SearchReadGroupSetsRequest) GetDatasetIds() []string { |
| if m != nil { |
| return m.DatasetIds |
| } |
| return nil |
| } |
| |
| func (m *SearchReadGroupSetsRequest) GetName() string { |
| if m != nil { |
| return m.Name |
| } |
| return "" |
| } |
| |
| func (m *SearchReadGroupSetsRequest) GetPageToken() string { |
| if m != nil { |
| return m.PageToken |
| } |
| return "" |
| } |
| |
| func (m *SearchReadGroupSetsRequest) GetPageSize() int32 { |
| if m != nil { |
| return m.PageSize |
| } |
| return 0 |
| } |
| |
| // The read group set search response. |
| type SearchReadGroupSetsResponse struct { |
| // The list of matching read group sets. |
| ReadGroupSets []*ReadGroupSet `protobuf:"bytes,1,rep,name=read_group_sets,json=readGroupSets,proto3" json:"read_group_sets,omitempty"` |
| // The continuation token, which is used to page through large result sets. |
| // Provide this value in a subsequent request to return the next page of |
| // results. This field will be empty if there aren't any additional results. |
| NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *SearchReadGroupSetsResponse) Reset() { *m = SearchReadGroupSetsResponse{} } |
| func (m *SearchReadGroupSetsResponse) String() string { return proto.CompactTextString(m) } |
| func (*SearchReadGroupSetsResponse) ProtoMessage() {} |
| func (*SearchReadGroupSetsResponse) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{1} |
| } |
| |
| func (m *SearchReadGroupSetsResponse) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_SearchReadGroupSetsResponse.Unmarshal(m, b) |
| } |
| func (m *SearchReadGroupSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_SearchReadGroupSetsResponse.Marshal(b, m, deterministic) |
| } |
| func (m *SearchReadGroupSetsResponse) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_SearchReadGroupSetsResponse.Merge(m, src) |
| } |
| func (m *SearchReadGroupSetsResponse) XXX_Size() int { |
| return xxx_messageInfo_SearchReadGroupSetsResponse.Size(m) |
| } |
| func (m *SearchReadGroupSetsResponse) XXX_DiscardUnknown() { |
| xxx_messageInfo_SearchReadGroupSetsResponse.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_SearchReadGroupSetsResponse proto.InternalMessageInfo |
| |
| func (m *SearchReadGroupSetsResponse) GetReadGroupSets() []*ReadGroupSet { |
| if m != nil { |
| return m.ReadGroupSets |
| } |
| return nil |
| } |
| |
| func (m *SearchReadGroupSetsResponse) GetNextPageToken() string { |
| if m != nil { |
| return m.NextPageToken |
| } |
| return "" |
| } |
| |
| // The read group set import request. |
| type ImportReadGroupSetsRequest struct { |
| // Required. The ID of the dataset these read group sets will belong to. The |
| // caller must have WRITE permissions to this dataset. |
| DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"` |
| // The reference set to which the imported read group sets are aligned to, if |
| // any. The reference names of this reference set must be a superset of those |
| // found in the imported file headers. If no reference set id is provided, a |
| // best effort is made to associate with a matching reference set. |
| ReferenceSetId string `protobuf:"bytes,4,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"` |
| // A list of URIs pointing at [BAM |
| // files](https://samtools.github.io/hts-specs/SAMv1.pdf) |
| // in Google Cloud Storage. |
| // Those URIs can include wildcards (*), but do not add or remove |
| // matching files before import has completed. |
| // |
| // Note that Google Cloud Storage object listing is only eventually |
| // consistent: files added may be not be immediately visible to |
| // everyone. Thus, if using a wildcard it is preferable not to start |
| // the import immediately after the files are created. |
| SourceUris []string `protobuf:"bytes,2,rep,name=source_uris,json=sourceUris,proto3" json:"source_uris,omitempty"` |
| // The partition strategy describes how read groups are partitioned into read |
| // group sets. |
| PartitionStrategy ImportReadGroupSetsRequest_PartitionStrategy `protobuf:"varint,5,opt,name=partition_strategy,json=partitionStrategy,proto3,enum=google.genomics.v1.ImportReadGroupSetsRequest_PartitionStrategy" json:"partition_strategy,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *ImportReadGroupSetsRequest) Reset() { *m = ImportReadGroupSetsRequest{} } |
| func (m *ImportReadGroupSetsRequest) String() string { return proto.CompactTextString(m) } |
| func (*ImportReadGroupSetsRequest) ProtoMessage() {} |
| func (*ImportReadGroupSetsRequest) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{2} |
| } |
| |
| func (m *ImportReadGroupSetsRequest) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_ImportReadGroupSetsRequest.Unmarshal(m, b) |
| } |
| func (m *ImportReadGroupSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_ImportReadGroupSetsRequest.Marshal(b, m, deterministic) |
| } |
| func (m *ImportReadGroupSetsRequest) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_ImportReadGroupSetsRequest.Merge(m, src) |
| } |
| func (m *ImportReadGroupSetsRequest) XXX_Size() int { |
| return xxx_messageInfo_ImportReadGroupSetsRequest.Size(m) |
| } |
| func (m *ImportReadGroupSetsRequest) XXX_DiscardUnknown() { |
| xxx_messageInfo_ImportReadGroupSetsRequest.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_ImportReadGroupSetsRequest proto.InternalMessageInfo |
| |
| func (m *ImportReadGroupSetsRequest) GetDatasetId() string { |
| if m != nil { |
| return m.DatasetId |
| } |
| return "" |
| } |
| |
| func (m *ImportReadGroupSetsRequest) GetReferenceSetId() string { |
| if m != nil { |
| return m.ReferenceSetId |
| } |
| return "" |
| } |
| |
| func (m *ImportReadGroupSetsRequest) GetSourceUris() []string { |
| if m != nil { |
| return m.SourceUris |
| } |
| return nil |
| } |
| |
| func (m *ImportReadGroupSetsRequest) GetPartitionStrategy() ImportReadGroupSetsRequest_PartitionStrategy { |
| if m != nil { |
| return m.PartitionStrategy |
| } |
| return ImportReadGroupSetsRequest_PARTITION_STRATEGY_UNSPECIFIED |
| } |
| |
| // The read group set import response. |
| type ImportReadGroupSetsResponse struct { |
| // IDs of the read group sets that were created. |
| ReadGroupSetIds []string `protobuf:"bytes,1,rep,name=read_group_set_ids,json=readGroupSetIds,proto3" json:"read_group_set_ids,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *ImportReadGroupSetsResponse) Reset() { *m = ImportReadGroupSetsResponse{} } |
| func (m *ImportReadGroupSetsResponse) String() string { return proto.CompactTextString(m) } |
| func (*ImportReadGroupSetsResponse) ProtoMessage() {} |
| func (*ImportReadGroupSetsResponse) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{3} |
| } |
| |
| func (m *ImportReadGroupSetsResponse) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_ImportReadGroupSetsResponse.Unmarshal(m, b) |
| } |
| func (m *ImportReadGroupSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_ImportReadGroupSetsResponse.Marshal(b, m, deterministic) |
| } |
| func (m *ImportReadGroupSetsResponse) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_ImportReadGroupSetsResponse.Merge(m, src) |
| } |
| func (m *ImportReadGroupSetsResponse) XXX_Size() int { |
| return xxx_messageInfo_ImportReadGroupSetsResponse.Size(m) |
| } |
| func (m *ImportReadGroupSetsResponse) XXX_DiscardUnknown() { |
| xxx_messageInfo_ImportReadGroupSetsResponse.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_ImportReadGroupSetsResponse proto.InternalMessageInfo |
| |
| func (m *ImportReadGroupSetsResponse) GetReadGroupSetIds() []string { |
| if m != nil { |
| return m.ReadGroupSetIds |
| } |
| return nil |
| } |
| |
| // The read group set export request. |
| type ExportReadGroupSetRequest struct { |
| // Required. The Google Cloud project ID that owns this |
| // export. The caller must have WRITE access to this project. |
| ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"` |
| // Required. A Google Cloud Storage URI for the exported BAM file. |
| // The currently authenticated user must have write access to the new file. |
| // An error will be returned if the URI already contains data. |
| ExportUri string `protobuf:"bytes,2,opt,name=export_uri,json=exportUri,proto3" json:"export_uri,omitempty"` |
| // Required. The ID of the read group set to export. The caller must have |
| // READ access to this read group set. |
| ReadGroupSetId string `protobuf:"bytes,3,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"` |
| // The reference names to export. If this is not specified, all reference |
| // sequences, including unmapped reads, are exported. |
| // Use `*` to export only unmapped reads. |
| ReferenceNames []string `protobuf:"bytes,4,rep,name=reference_names,json=referenceNames,proto3" json:"reference_names,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *ExportReadGroupSetRequest) Reset() { *m = ExportReadGroupSetRequest{} } |
| func (m *ExportReadGroupSetRequest) String() string { return proto.CompactTextString(m) } |
| func (*ExportReadGroupSetRequest) ProtoMessage() {} |
| func (*ExportReadGroupSetRequest) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{4} |
| } |
| |
| func (m *ExportReadGroupSetRequest) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_ExportReadGroupSetRequest.Unmarshal(m, b) |
| } |
| func (m *ExportReadGroupSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_ExportReadGroupSetRequest.Marshal(b, m, deterministic) |
| } |
| func (m *ExportReadGroupSetRequest) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_ExportReadGroupSetRequest.Merge(m, src) |
| } |
| func (m *ExportReadGroupSetRequest) XXX_Size() int { |
| return xxx_messageInfo_ExportReadGroupSetRequest.Size(m) |
| } |
| func (m *ExportReadGroupSetRequest) XXX_DiscardUnknown() { |
| xxx_messageInfo_ExportReadGroupSetRequest.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_ExportReadGroupSetRequest proto.InternalMessageInfo |
| |
| func (m *ExportReadGroupSetRequest) GetProjectId() string { |
| if m != nil { |
| return m.ProjectId |
| } |
| return "" |
| } |
| |
| func (m *ExportReadGroupSetRequest) GetExportUri() string { |
| if m != nil { |
| return m.ExportUri |
| } |
| return "" |
| } |
| |
| func (m *ExportReadGroupSetRequest) GetReadGroupSetId() string { |
| if m != nil { |
| return m.ReadGroupSetId |
| } |
| return "" |
| } |
| |
| func (m *ExportReadGroupSetRequest) GetReferenceNames() []string { |
| if m != nil { |
| return m.ReferenceNames |
| } |
| return nil |
| } |
| |
| type UpdateReadGroupSetRequest struct { |
| // The ID of the read group set to be updated. The caller must have WRITE |
| // permissions to the dataset associated with this read group set. |
| ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"` |
| // The new read group set data. See `updateMask` for details on mutability of |
| // fields. |
| ReadGroupSet *ReadGroupSet `protobuf:"bytes,2,opt,name=read_group_set,json=readGroupSet,proto3" json:"read_group_set,omitempty"` |
| // An optional mask specifying which fields to update. Supported fields: |
| // |
| // * [name][google.genomics.v1.ReadGroupSet.name]. |
| // * [referenceSetId][google.genomics.v1.ReadGroupSet.reference_set_id]. |
| // |
| // Leaving `updateMask` unset is equivalent to specifying all mutable |
| // fields. |
| UpdateMask *field_mask.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *UpdateReadGroupSetRequest) Reset() { *m = UpdateReadGroupSetRequest{} } |
| func (m *UpdateReadGroupSetRequest) String() string { return proto.CompactTextString(m) } |
| func (*UpdateReadGroupSetRequest) ProtoMessage() {} |
| func (*UpdateReadGroupSetRequest) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{5} |
| } |
| |
| func (m *UpdateReadGroupSetRequest) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_UpdateReadGroupSetRequest.Unmarshal(m, b) |
| } |
| func (m *UpdateReadGroupSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_UpdateReadGroupSetRequest.Marshal(b, m, deterministic) |
| } |
| func (m *UpdateReadGroupSetRequest) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_UpdateReadGroupSetRequest.Merge(m, src) |
| } |
| func (m *UpdateReadGroupSetRequest) XXX_Size() int { |
| return xxx_messageInfo_UpdateReadGroupSetRequest.Size(m) |
| } |
| func (m *UpdateReadGroupSetRequest) XXX_DiscardUnknown() { |
| xxx_messageInfo_UpdateReadGroupSetRequest.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_UpdateReadGroupSetRequest proto.InternalMessageInfo |
| |
| func (m *UpdateReadGroupSetRequest) GetReadGroupSetId() string { |
| if m != nil { |
| return m.ReadGroupSetId |
| } |
| return "" |
| } |
| |
| func (m *UpdateReadGroupSetRequest) GetReadGroupSet() *ReadGroupSet { |
| if m != nil { |
| return m.ReadGroupSet |
| } |
| return nil |
| } |
| |
| func (m *UpdateReadGroupSetRequest) GetUpdateMask() *field_mask.FieldMask { |
| if m != nil { |
| return m.UpdateMask |
| } |
| return nil |
| } |
| |
| type DeleteReadGroupSetRequest struct { |
| // The ID of the read group set to be deleted. The caller must have WRITE |
| // permissions to the dataset associated with this read group set. |
| ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *DeleteReadGroupSetRequest) Reset() { *m = DeleteReadGroupSetRequest{} } |
| func (m *DeleteReadGroupSetRequest) String() string { return proto.CompactTextString(m) } |
| func (*DeleteReadGroupSetRequest) ProtoMessage() {} |
| func (*DeleteReadGroupSetRequest) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{6} |
| } |
| |
| func (m *DeleteReadGroupSetRequest) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_DeleteReadGroupSetRequest.Unmarshal(m, b) |
| } |
| func (m *DeleteReadGroupSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_DeleteReadGroupSetRequest.Marshal(b, m, deterministic) |
| } |
| func (m *DeleteReadGroupSetRequest) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_DeleteReadGroupSetRequest.Merge(m, src) |
| } |
| func (m *DeleteReadGroupSetRequest) XXX_Size() int { |
| return xxx_messageInfo_DeleteReadGroupSetRequest.Size(m) |
| } |
| func (m *DeleteReadGroupSetRequest) XXX_DiscardUnknown() { |
| xxx_messageInfo_DeleteReadGroupSetRequest.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_DeleteReadGroupSetRequest proto.InternalMessageInfo |
| |
| func (m *DeleteReadGroupSetRequest) GetReadGroupSetId() string { |
| if m != nil { |
| return m.ReadGroupSetId |
| } |
| return "" |
| } |
| |
| type GetReadGroupSetRequest struct { |
| // The ID of the read group set. |
| ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *GetReadGroupSetRequest) Reset() { *m = GetReadGroupSetRequest{} } |
| func (m *GetReadGroupSetRequest) String() string { return proto.CompactTextString(m) } |
| func (*GetReadGroupSetRequest) ProtoMessage() {} |
| func (*GetReadGroupSetRequest) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{7} |
| } |
| |
| func (m *GetReadGroupSetRequest) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_GetReadGroupSetRequest.Unmarshal(m, b) |
| } |
| func (m *GetReadGroupSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_GetReadGroupSetRequest.Marshal(b, m, deterministic) |
| } |
| func (m *GetReadGroupSetRequest) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_GetReadGroupSetRequest.Merge(m, src) |
| } |
| func (m *GetReadGroupSetRequest) XXX_Size() int { |
| return xxx_messageInfo_GetReadGroupSetRequest.Size(m) |
| } |
| func (m *GetReadGroupSetRequest) XXX_DiscardUnknown() { |
| xxx_messageInfo_GetReadGroupSetRequest.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_GetReadGroupSetRequest proto.InternalMessageInfo |
| |
| func (m *GetReadGroupSetRequest) GetReadGroupSetId() string { |
| if m != nil { |
| return m.ReadGroupSetId |
| } |
| return "" |
| } |
| |
| type ListCoverageBucketsRequest struct { |
| // Required. The ID of the read group set over which coverage is requested. |
| ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"` |
| // The name of the reference to query, within the reference set associated |
| // with this query. Optional. |
| ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"` |
| // The start position of the range on the reference, 0-based inclusive. If |
| // specified, `referenceName` must also be specified. Defaults to 0. |
| Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"` |
| // The end position of the range on the reference, 0-based exclusive. If |
| // specified, `referenceName` must also be specified. If unset or 0, defaults |
| // to the length of the reference. |
| End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"` |
| // The desired width of each reported coverage bucket in base pairs. This |
| // will be rounded down to the nearest precomputed bucket width; the value |
| // of which is returned as `bucketWidth` in the response. Defaults |
| // to infinity (each bucket spans an entire reference sequence) or the length |
| // of the target range, if specified. The smallest precomputed |
| // `bucketWidth` is currently 2048 base pairs; this is subject to |
| // change. |
| TargetBucketWidth int64 `protobuf:"varint,6,opt,name=target_bucket_width,json=targetBucketWidth,proto3" json:"target_bucket_width,omitempty"` |
| // The continuation token, which is used to page through large result sets. |
| // To get the next page of results, set this parameter to the value of |
| // `nextPageToken` from the previous response. |
| PageToken string `protobuf:"bytes,7,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"` |
| // The maximum number of results to return in a single page. If unspecified, |
| // defaults to 1024. The maximum value is 2048. |
| PageSize int32 `protobuf:"varint,8,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *ListCoverageBucketsRequest) Reset() { *m = ListCoverageBucketsRequest{} } |
| func (m *ListCoverageBucketsRequest) String() string { return proto.CompactTextString(m) } |
| func (*ListCoverageBucketsRequest) ProtoMessage() {} |
| func (*ListCoverageBucketsRequest) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{8} |
| } |
| |
| func (m *ListCoverageBucketsRequest) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_ListCoverageBucketsRequest.Unmarshal(m, b) |
| } |
| func (m *ListCoverageBucketsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_ListCoverageBucketsRequest.Marshal(b, m, deterministic) |
| } |
| func (m *ListCoverageBucketsRequest) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_ListCoverageBucketsRequest.Merge(m, src) |
| } |
| func (m *ListCoverageBucketsRequest) XXX_Size() int { |
| return xxx_messageInfo_ListCoverageBucketsRequest.Size(m) |
| } |
| func (m *ListCoverageBucketsRequest) XXX_DiscardUnknown() { |
| xxx_messageInfo_ListCoverageBucketsRequest.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_ListCoverageBucketsRequest proto.InternalMessageInfo |
| |
| func (m *ListCoverageBucketsRequest) GetReadGroupSetId() string { |
| if m != nil { |
| return m.ReadGroupSetId |
| } |
| return "" |
| } |
| |
| func (m *ListCoverageBucketsRequest) GetReferenceName() string { |
| if m != nil { |
| return m.ReferenceName |
| } |
| return "" |
| } |
| |
| func (m *ListCoverageBucketsRequest) GetStart() int64 { |
| if m != nil { |
| return m.Start |
| } |
| return 0 |
| } |
| |
| func (m *ListCoverageBucketsRequest) GetEnd() int64 { |
| if m != nil { |
| return m.End |
| } |
| return 0 |
| } |
| |
| func (m *ListCoverageBucketsRequest) GetTargetBucketWidth() int64 { |
| if m != nil { |
| return m.TargetBucketWidth |
| } |
| return 0 |
| } |
| |
| func (m *ListCoverageBucketsRequest) GetPageToken() string { |
| if m != nil { |
| return m.PageToken |
| } |
| return "" |
| } |
| |
| func (m *ListCoverageBucketsRequest) GetPageSize() int32 { |
| if m != nil { |
| return m.PageSize |
| } |
| return 0 |
| } |
| |
| // A bucket over which read coverage has been precomputed. A bucket corresponds |
| // to a specific range of the reference sequence. |
| type CoverageBucket struct { |
| // The genomic coordinate range spanned by this bucket. |
| Range *Range `protobuf:"bytes,1,opt,name=range,proto3" json:"range,omitempty"` |
| // The average number of reads which are aligned to each individual |
| // reference base in this bucket. |
| MeanCoverage float32 `protobuf:"fixed32,2,opt,name=mean_coverage,json=meanCoverage,proto3" json:"mean_coverage,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *CoverageBucket) Reset() { *m = CoverageBucket{} } |
| func (m *CoverageBucket) String() string { return proto.CompactTextString(m) } |
| func (*CoverageBucket) ProtoMessage() {} |
| func (*CoverageBucket) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{9} |
| } |
| |
| func (m *CoverageBucket) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_CoverageBucket.Unmarshal(m, b) |
| } |
| func (m *CoverageBucket) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_CoverageBucket.Marshal(b, m, deterministic) |
| } |
| func (m *CoverageBucket) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_CoverageBucket.Merge(m, src) |
| } |
| func (m *CoverageBucket) XXX_Size() int { |
| return xxx_messageInfo_CoverageBucket.Size(m) |
| } |
| func (m *CoverageBucket) XXX_DiscardUnknown() { |
| xxx_messageInfo_CoverageBucket.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_CoverageBucket proto.InternalMessageInfo |
| |
| func (m *CoverageBucket) GetRange() *Range { |
| if m != nil { |
| return m.Range |
| } |
| return nil |
| } |
| |
| func (m *CoverageBucket) GetMeanCoverage() float32 { |
| if m != nil { |
| return m.MeanCoverage |
| } |
| return 0 |
| } |
| |
| type ListCoverageBucketsResponse struct { |
| // The length of each coverage bucket in base pairs. Note that buckets at the |
| // end of a reference sequence may be shorter. This value is omitted if the |
| // bucket width is infinity (the default behaviour, with no range or |
| // `targetBucketWidth`). |
| BucketWidth int64 `protobuf:"varint,1,opt,name=bucket_width,json=bucketWidth,proto3" json:"bucket_width,omitempty"` |
| // The coverage buckets. The list of buckets is sparse; a bucket with 0 |
| // overlapping reads is not returned. A bucket never crosses more than one |
| // reference sequence. Each bucket has width `bucketWidth`, unless |
| // its end is the end of the reference sequence. |
| CoverageBuckets []*CoverageBucket `protobuf:"bytes,2,rep,name=coverage_buckets,json=coverageBuckets,proto3" json:"coverage_buckets,omitempty"` |
| // The continuation token, which is used to page through large result sets. |
| // Provide this value in a subsequent request to return the next page of |
| // results. This field will be empty if there aren't any additional results. |
| NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *ListCoverageBucketsResponse) Reset() { *m = ListCoverageBucketsResponse{} } |
| func (m *ListCoverageBucketsResponse) String() string { return proto.CompactTextString(m) } |
| func (*ListCoverageBucketsResponse) ProtoMessage() {} |
| func (*ListCoverageBucketsResponse) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{10} |
| } |
| |
| func (m *ListCoverageBucketsResponse) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_ListCoverageBucketsResponse.Unmarshal(m, b) |
| } |
| func (m *ListCoverageBucketsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_ListCoverageBucketsResponse.Marshal(b, m, deterministic) |
| } |
| func (m *ListCoverageBucketsResponse) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_ListCoverageBucketsResponse.Merge(m, src) |
| } |
| func (m *ListCoverageBucketsResponse) XXX_Size() int { |
| return xxx_messageInfo_ListCoverageBucketsResponse.Size(m) |
| } |
| func (m *ListCoverageBucketsResponse) XXX_DiscardUnknown() { |
| xxx_messageInfo_ListCoverageBucketsResponse.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_ListCoverageBucketsResponse proto.InternalMessageInfo |
| |
| func (m *ListCoverageBucketsResponse) GetBucketWidth() int64 { |
| if m != nil { |
| return m.BucketWidth |
| } |
| return 0 |
| } |
| |
| func (m *ListCoverageBucketsResponse) GetCoverageBuckets() []*CoverageBucket { |
| if m != nil { |
| return m.CoverageBuckets |
| } |
| return nil |
| } |
| |
| func (m *ListCoverageBucketsResponse) GetNextPageToken() string { |
| if m != nil { |
| return m.NextPageToken |
| } |
| return "" |
| } |
| |
| // The read search request. |
| type SearchReadsRequest struct { |
| // The IDs of the read groups sets within which to search for reads. All |
| // specified read group sets must be aligned against a common set of reference |
| // sequences; this defines the genomic coordinates for the query. Must specify |
| // one of `readGroupSetIds` or `readGroupIds`. |
| ReadGroupSetIds []string `protobuf:"bytes,1,rep,name=read_group_set_ids,json=readGroupSetIds,proto3" json:"read_group_set_ids,omitempty"` |
| // The IDs of the read groups within which to search for reads. All specified |
| // read groups must belong to the same read group sets. Must specify one of |
| // `readGroupSetIds` or `readGroupIds`. |
| ReadGroupIds []string `protobuf:"bytes,5,rep,name=read_group_ids,json=readGroupIds,proto3" json:"read_group_ids,omitempty"` |
| // The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to |
| // `*`, only unmapped reads are returned. If unspecified, all reads (mapped |
| // and unmapped) are returned. |
| ReferenceName string `protobuf:"bytes,7,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"` |
| // The start position of the range on the reference, 0-based inclusive. If |
| // specified, `referenceName` must also be specified. |
| Start int64 `protobuf:"varint,8,opt,name=start,proto3" json:"start,omitempty"` |
| // The end position of the range on the reference, 0-based exclusive. If |
| // specified, `referenceName` must also be specified. |
| End int64 `protobuf:"varint,9,opt,name=end,proto3" json:"end,omitempty"` |
| // The continuation token, which is used to page through large result sets. |
| // To get the next page of results, set this parameter to the value of |
| // `nextPageToken` from the previous response. |
| PageToken string `protobuf:"bytes,3,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"` |
| // The maximum number of results to return in a single page. If unspecified, |
| // defaults to 256. The maximum value is 2048. |
| PageSize int32 `protobuf:"varint,4,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *SearchReadsRequest) Reset() { *m = SearchReadsRequest{} } |
| func (m *SearchReadsRequest) String() string { return proto.CompactTextString(m) } |
| func (*SearchReadsRequest) ProtoMessage() {} |
| func (*SearchReadsRequest) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{11} |
| } |
| |
| func (m *SearchReadsRequest) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_SearchReadsRequest.Unmarshal(m, b) |
| } |
| func (m *SearchReadsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_SearchReadsRequest.Marshal(b, m, deterministic) |
| } |
| func (m *SearchReadsRequest) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_SearchReadsRequest.Merge(m, src) |
| } |
| func (m *SearchReadsRequest) XXX_Size() int { |
| return xxx_messageInfo_SearchReadsRequest.Size(m) |
| } |
| func (m *SearchReadsRequest) XXX_DiscardUnknown() { |
| xxx_messageInfo_SearchReadsRequest.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_SearchReadsRequest proto.InternalMessageInfo |
| |
| func (m *SearchReadsRequest) GetReadGroupSetIds() []string { |
| if m != nil { |
| return m.ReadGroupSetIds |
| } |
| return nil |
| } |
| |
| func (m *SearchReadsRequest) GetReadGroupIds() []string { |
| if m != nil { |
| return m.ReadGroupIds |
| } |
| return nil |
| } |
| |
| func (m *SearchReadsRequest) GetReferenceName() string { |
| if m != nil { |
| return m.ReferenceName |
| } |
| return "" |
| } |
| |
| func (m *SearchReadsRequest) GetStart() int64 { |
| if m != nil { |
| return m.Start |
| } |
| return 0 |
| } |
| |
| func (m *SearchReadsRequest) GetEnd() int64 { |
| if m != nil { |
| return m.End |
| } |
| return 0 |
| } |
| |
| func (m *SearchReadsRequest) GetPageToken() string { |
| if m != nil { |
| return m.PageToken |
| } |
| return "" |
| } |
| |
| func (m *SearchReadsRequest) GetPageSize() int32 { |
| if m != nil { |
| return m.PageSize |
| } |
| return 0 |
| } |
| |
| // The read search response. |
| type SearchReadsResponse struct { |
| // The list of matching alignments sorted by mapped genomic coordinate, |
| // if any, ascending in position within the same reference. Unmapped reads, |
| // which have no position, are returned contiguously and are sorted in |
| // ascending lexicographic order by fragment name. |
| Alignments []*Read `protobuf:"bytes,1,rep,name=alignments,proto3" json:"alignments,omitempty"` |
| // The continuation token, which is used to page through large result sets. |
| // Provide this value in a subsequent request to return the next page of |
| // results. This field will be empty if there aren't any additional results. |
| NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *SearchReadsResponse) Reset() { *m = SearchReadsResponse{} } |
| func (m *SearchReadsResponse) String() string { return proto.CompactTextString(m) } |
| func (*SearchReadsResponse) ProtoMessage() {} |
| func (*SearchReadsResponse) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{12} |
| } |
| |
| func (m *SearchReadsResponse) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_SearchReadsResponse.Unmarshal(m, b) |
| } |
| func (m *SearchReadsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_SearchReadsResponse.Marshal(b, m, deterministic) |
| } |
| func (m *SearchReadsResponse) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_SearchReadsResponse.Merge(m, src) |
| } |
| func (m *SearchReadsResponse) XXX_Size() int { |
| return xxx_messageInfo_SearchReadsResponse.Size(m) |
| } |
| func (m *SearchReadsResponse) XXX_DiscardUnknown() { |
| xxx_messageInfo_SearchReadsResponse.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_SearchReadsResponse proto.InternalMessageInfo |
| |
| func (m *SearchReadsResponse) GetAlignments() []*Read { |
| if m != nil { |
| return m.Alignments |
| } |
| return nil |
| } |
| |
| func (m *SearchReadsResponse) GetNextPageToken() string { |
| if m != nil { |
| return m.NextPageToken |
| } |
| return "" |
| } |
| |
| // The stream reads request. |
| type StreamReadsRequest struct { |
| // The Google Cloud project ID which will be billed |
| // for this access. The caller must have WRITE access to this project. |
| // Required. |
| ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"` |
| // The ID of the read group set from which to stream reads. |
| ReadGroupSetId string `protobuf:"bytes,2,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"` |
| // The reference sequence name, for example `chr1`, |
| // `1`, or `chrX`. If set to *, only unmapped reads are |
| // returned. |
| ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"` |
| // The start position of the range on the reference, 0-based inclusive. If |
| // specified, `referenceName` must also be specified. |
| Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"` |
| // The end position of the range on the reference, 0-based exclusive. If |
| // specified, `referenceName` must also be specified. |
| End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"` |
| // Restricts results to a shard containing approximately `1/totalShards` |
| // of the normal response payload for this query. Results from a sharded |
| // request are disjoint from those returned by all queries which differ only |
| // in their shard parameter. A shard may yield 0 results; this is especially |
| // likely for large values of `totalShards`. |
| // |
| // Valid values are `[0, totalShards)`. |
| Shard int32 `protobuf:"varint,6,opt,name=shard,proto3" json:"shard,omitempty"` |
| // Specifying `totalShards` causes a disjoint subset of the normal response |
| // payload to be returned for each query with a unique `shard` parameter |
| // specified. A best effort is made to yield equally sized shards. Sharding |
| // can be used to distribute processing amongst workers, where each worker is |
| // assigned a unique `shard` number and all workers specify the same |
| // `totalShards` number. The union of reads returned for all sharded queries |
| // `[0, totalShards)` is equal to those returned by a single unsharded query. |
| // |
| // Queries for different values of `totalShards` with common divisors will |
| // share shard boundaries. For example, streaming `shard` 2 of 5 |
| // `totalShards` yields the same results as streaming `shard`s 4 and 5 of 10 |
| // `totalShards`. This property can be leveraged for adaptive retries. |
| TotalShards int32 `protobuf:"varint,7,opt,name=total_shards,json=totalShards,proto3" json:"total_shards,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *StreamReadsRequest) Reset() { *m = StreamReadsRequest{} } |
| func (m *StreamReadsRequest) String() string { return proto.CompactTextString(m) } |
| func (*StreamReadsRequest) ProtoMessage() {} |
| func (*StreamReadsRequest) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{13} |
| } |
| |
| func (m *StreamReadsRequest) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_StreamReadsRequest.Unmarshal(m, b) |
| } |
| func (m *StreamReadsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_StreamReadsRequest.Marshal(b, m, deterministic) |
| } |
| func (m *StreamReadsRequest) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_StreamReadsRequest.Merge(m, src) |
| } |
| func (m *StreamReadsRequest) XXX_Size() int { |
| return xxx_messageInfo_StreamReadsRequest.Size(m) |
| } |
| func (m *StreamReadsRequest) XXX_DiscardUnknown() { |
| xxx_messageInfo_StreamReadsRequest.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_StreamReadsRequest proto.InternalMessageInfo |
| |
| func (m *StreamReadsRequest) GetProjectId() string { |
| if m != nil { |
| return m.ProjectId |
| } |
| return "" |
| } |
| |
| func (m *StreamReadsRequest) GetReadGroupSetId() string { |
| if m != nil { |
| return m.ReadGroupSetId |
| } |
| return "" |
| } |
| |
| func (m *StreamReadsRequest) GetReferenceName() string { |
| if m != nil { |
| return m.ReferenceName |
| } |
| return "" |
| } |
| |
| func (m *StreamReadsRequest) GetStart() int64 { |
| if m != nil { |
| return m.Start |
| } |
| return 0 |
| } |
| |
| func (m *StreamReadsRequest) GetEnd() int64 { |
| if m != nil { |
| return m.End |
| } |
| return 0 |
| } |
| |
| func (m *StreamReadsRequest) GetShard() int32 { |
| if m != nil { |
| return m.Shard |
| } |
| return 0 |
| } |
| |
| func (m *StreamReadsRequest) GetTotalShards() int32 { |
| if m != nil { |
| return m.TotalShards |
| } |
| return 0 |
| } |
| |
| type StreamReadsResponse struct { |
| Alignments []*Read `protobuf:"bytes,1,rep,name=alignments,proto3" json:"alignments,omitempty"` |
| XXX_NoUnkeyedLiteral struct{} `json:"-"` |
| XXX_unrecognized []byte `json:"-"` |
| XXX_sizecache int32 `json:"-"` |
| } |
| |
| func (m *StreamReadsResponse) Reset() { *m = StreamReadsResponse{} } |
| func (m *StreamReadsResponse) String() string { return proto.CompactTextString(m) } |
| func (*StreamReadsResponse) ProtoMessage() {} |
| func (*StreamReadsResponse) Descriptor() ([]byte, []int) { |
| return fileDescriptor_6b02d5d0c80a106c, []int{14} |
| } |
| |
| func (m *StreamReadsResponse) XXX_Unmarshal(b []byte) error { |
| return xxx_messageInfo_StreamReadsResponse.Unmarshal(m, b) |
| } |
| func (m *StreamReadsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) { |
| return xxx_messageInfo_StreamReadsResponse.Marshal(b, m, deterministic) |
| } |
| func (m *StreamReadsResponse) XXX_Merge(src proto.Message) { |
| xxx_messageInfo_StreamReadsResponse.Merge(m, src) |
| } |
| func (m *StreamReadsResponse) XXX_Size() int { |
| return xxx_messageInfo_StreamReadsResponse.Size(m) |
| } |
| func (m *StreamReadsResponse) XXX_DiscardUnknown() { |
| xxx_messageInfo_StreamReadsResponse.DiscardUnknown(m) |
| } |
| |
| var xxx_messageInfo_StreamReadsResponse proto.InternalMessageInfo |
| |
| func (m *StreamReadsResponse) GetAlignments() []*Read { |
| if m != nil { |
| return m.Alignments |
| } |
| return nil |
| } |
| |
| func init() { |
| proto.RegisterEnum("google.genomics.v1.ImportReadGroupSetsRequest_PartitionStrategy", ImportReadGroupSetsRequest_PartitionStrategy_name, ImportReadGroupSetsRequest_PartitionStrategy_value) |
| proto.RegisterType((*SearchReadGroupSetsRequest)(nil), "google.genomics.v1.SearchReadGroupSetsRequest") |
| proto.RegisterType((*SearchReadGroupSetsResponse)(nil), "google.genomics.v1.SearchReadGroupSetsResponse") |
| proto.RegisterType((*ImportReadGroupSetsRequest)(nil), "google.genomics.v1.ImportReadGroupSetsRequest") |
| proto.RegisterType((*ImportReadGroupSetsResponse)(nil), "google.genomics.v1.ImportReadGroupSetsResponse") |
| proto.RegisterType((*ExportReadGroupSetRequest)(nil), "google.genomics.v1.ExportReadGroupSetRequest") |
| proto.RegisterType((*UpdateReadGroupSetRequest)(nil), "google.genomics.v1.UpdateReadGroupSetRequest") |
| proto.RegisterType((*DeleteReadGroupSetRequest)(nil), "google.genomics.v1.DeleteReadGroupSetRequest") |
| proto.RegisterType((*GetReadGroupSetRequest)(nil), "google.genomics.v1.GetReadGroupSetRequest") |
| proto.RegisterType((*ListCoverageBucketsRequest)(nil), "google.genomics.v1.ListCoverageBucketsRequest") |
| proto.RegisterType((*CoverageBucket)(nil), "google.genomics.v1.CoverageBucket") |
| proto.RegisterType((*ListCoverageBucketsResponse)(nil), "google.genomics.v1.ListCoverageBucketsResponse") |
| proto.RegisterType((*SearchReadsRequest)(nil), "google.genomics.v1.SearchReadsRequest") |
| proto.RegisterType((*SearchReadsResponse)(nil), "google.genomics.v1.SearchReadsResponse") |
| proto.RegisterType((*StreamReadsRequest)(nil), "google.genomics.v1.StreamReadsRequest") |
| proto.RegisterType((*StreamReadsResponse)(nil), "google.genomics.v1.StreamReadsResponse") |
| } |
| |
| func init() { proto.RegisterFile("google/genomics/v1/reads.proto", fileDescriptor_6b02d5d0c80a106c) } |
| |
| var fileDescriptor_6b02d5d0c80a106c = []byte{ |
| // 1333 bytes of a gzipped FileDescriptorProto |
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| } |
| |
| // Reference imports to suppress errors if they are not otherwise used. |
| var _ context.Context |
| var _ grpc.ClientConnInterface |
| |
| // This is a compile-time assertion to ensure that this generated file |
| // is compatible with the grpc package it is being compiled against. |
| const _ = grpc.SupportPackageIsVersion6 |
| |
| // StreamingReadServiceClient is the client API for StreamingReadService service. |
| // |
| // For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream. |
| type StreamingReadServiceClient interface { |
| // Returns a stream of all the reads matching the search request, ordered |
| // by reference name, position, and ID. |
| StreamReads(ctx context.Context, in *StreamReadsRequest, opts ...grpc.CallOption) (StreamingReadService_StreamReadsClient, error) |
| } |
| |
| type streamingReadServiceClient struct { |
| cc grpc.ClientConnInterface |
| } |
| |
| func NewStreamingReadServiceClient(cc grpc.ClientConnInterface) StreamingReadServiceClient { |
| return &streamingReadServiceClient{cc} |
| } |
| |
| func (c *streamingReadServiceClient) StreamReads(ctx context.Context, in *StreamReadsRequest, opts ...grpc.CallOption) (StreamingReadService_StreamReadsClient, error) { |
| stream, err := c.cc.NewStream(ctx, &_StreamingReadService_serviceDesc.Streams[0], "/google.genomics.v1.StreamingReadService/StreamReads", opts...) |
| if err != nil { |
| return nil, err |
| } |
| x := &streamingReadServiceStreamReadsClient{stream} |
| if err := x.ClientStream.SendMsg(in); err != nil { |
| return nil, err |
| } |
| if err := x.ClientStream.CloseSend(); err != nil { |
| return nil, err |
| } |
| return x, nil |
| } |
| |
| type StreamingReadService_StreamReadsClient interface { |
| Recv() (*StreamReadsResponse, error) |
| grpc.ClientStream |
| } |
| |
| type streamingReadServiceStreamReadsClient struct { |
| grpc.ClientStream |
| } |
| |
| func (x *streamingReadServiceStreamReadsClient) Recv() (*StreamReadsResponse, error) { |
| m := new(StreamReadsResponse) |
| if err := x.ClientStream.RecvMsg(m); err != nil { |
| return nil, err |
| } |
| return m, nil |
| } |
| |
| // StreamingReadServiceServer is the server API for StreamingReadService service. |
| type StreamingReadServiceServer interface { |
| // Returns a stream of all the reads matching the search request, ordered |
| // by reference name, position, and ID. |
| StreamReads(*StreamReadsRequest, StreamingReadService_StreamReadsServer) error |
| } |
| |
| // UnimplementedStreamingReadServiceServer can be embedded to have forward compatible implementations. |
| type UnimplementedStreamingReadServiceServer struct { |
| } |
| |
| func (*UnimplementedStreamingReadServiceServer) StreamReads(req *StreamReadsRequest, srv StreamingReadService_StreamReadsServer) error { |
| return status.Errorf(codes.Unimplemented, "method StreamReads not implemented") |
| } |
| |
| func RegisterStreamingReadServiceServer(s *grpc.Server, srv StreamingReadServiceServer) { |
| s.RegisterService(&_StreamingReadService_serviceDesc, srv) |
| } |
| |
| func _StreamingReadService_StreamReads_Handler(srv interface{}, stream grpc.ServerStream) error { |
| m := new(StreamReadsRequest) |
| if err := stream.RecvMsg(m); err != nil { |
| return err |
| } |
| return srv.(StreamingReadServiceServer).StreamReads(m, &streamingReadServiceStreamReadsServer{stream}) |
| } |
| |
| type StreamingReadService_StreamReadsServer interface { |
| Send(*StreamReadsResponse) error |
| grpc.ServerStream |
| } |
| |
| type streamingReadServiceStreamReadsServer struct { |
| grpc.ServerStream |
| } |
| |
| func (x *streamingReadServiceStreamReadsServer) Send(m *StreamReadsResponse) error { |
| return x.ServerStream.SendMsg(m) |
| } |
| |
| var _StreamingReadService_serviceDesc = grpc.ServiceDesc{ |
| ServiceName: "google.genomics.v1.StreamingReadService", |
| HandlerType: (*StreamingReadServiceServer)(nil), |
| Methods: []grpc.MethodDesc{}, |
| Streams: []grpc.StreamDesc{ |
| { |
| StreamName: "StreamReads", |
| Handler: _StreamingReadService_StreamReads_Handler, |
| ServerStreams: true, |
| }, |
| }, |
| Metadata: "google/genomics/v1/reads.proto", |
| } |
| |
| // ReadServiceV1Client is the client API for ReadServiceV1 service. |
| // |
| // For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream. |
| type ReadServiceV1Client interface { |
| // Creates read group sets by asynchronously importing the provided |
| // information. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // The caller must have WRITE permissions to the dataset. |
| // |
| // ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import |
| // |
| // - Tags will be converted to strings - tag types are not preserved |
| // - Comments (`@CO`) in the input file header will not be preserved |
| // - Original header order of references (`@SQ`) will not be preserved |
| // - Any reverse stranded unmapped reads will be reverse complemented, and |
| // their qualities (also the "BQ" and "OQ" tags, if any) will be reversed |
| // - Unmapped reads will be stripped of positional information (reference name |
| // and position) |
| ImportReadGroupSets(ctx context.Context, in *ImportReadGroupSetsRequest, opts ...grpc.CallOption) (*longrunning.Operation, error) |
| // Exports a read group set to a BAM file in Google Cloud Storage. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Note that currently there may be some differences between exported BAM |
| // files and the original BAM file at the time of import. See |
| // [ImportReadGroupSets][google.genomics.v1.ReadServiceV1.ImportReadGroupSets] |
| // for caveats. |
| ExportReadGroupSet(ctx context.Context, in *ExportReadGroupSetRequest, opts ...grpc.CallOption) (*longrunning.Operation, error) |
| // Searches for read group sets matching the criteria. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Implements |
| // [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135). |
| SearchReadGroupSets(ctx context.Context, in *SearchReadGroupSetsRequest, opts ...grpc.CallOption) (*SearchReadGroupSetsResponse, error) |
| // Updates a read group set. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // This method supports patch semantics. |
| UpdateReadGroupSet(ctx context.Context, in *UpdateReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error) |
| // Deletes a read group set. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| DeleteReadGroupSet(ctx context.Context, in *DeleteReadGroupSetRequest, opts ...grpc.CallOption) (*empty.Empty, error) |
| // Gets a read group set by ID. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| GetReadGroupSet(ctx context.Context, in *GetReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error) |
| // Lists fixed width coverage buckets for a read group set, each of which |
| // correspond to a range of a reference sequence. Each bucket summarizes |
| // coverage information across its corresponding genomic range. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Coverage is defined as the number of reads which are aligned to a given |
| // base in the reference sequence. Coverage buckets are available at several |
| // precomputed bucket widths, enabling retrieval of various coverage 'zoom |
| // levels'. The caller must have READ permissions for the target read group |
| // set. |
| ListCoverageBuckets(ctx context.Context, in *ListCoverageBucketsRequest, opts ...grpc.CallOption) (*ListCoverageBucketsResponse, error) |
| // Gets a list of reads for one or more read group sets. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Reads search operates over a genomic coordinate space of reference sequence |
| // & position defined over the reference sequences to which the requested |
| // read group sets are aligned. |
| // |
| // If a target positional range is specified, search returns all reads whose |
| // alignment to the reference genome overlap the range. A query which |
| // specifies only read group set IDs yields all reads in those read group |
| // sets, including unmapped reads. |
| // |
| // All reads returned (including reads on subsequent pages) are ordered by |
| // genomic coordinate (by reference sequence, then position). Reads with |
| // equivalent genomic coordinates are returned in an unspecified order. This |
| // order is consistent, such that two queries for the same content (regardless |
| // of page size) yield reads in the same order across their respective streams |
| // of paginated responses. |
| // |
| // Implements |
| // [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85). |
| SearchReads(ctx context.Context, in *SearchReadsRequest, opts ...grpc.CallOption) (*SearchReadsResponse, error) |
| } |
| |
| type readServiceV1Client struct { |
| cc grpc.ClientConnInterface |
| } |
| |
| func NewReadServiceV1Client(cc grpc.ClientConnInterface) ReadServiceV1Client { |
| return &readServiceV1Client{cc} |
| } |
| |
| func (c *readServiceV1Client) ImportReadGroupSets(ctx context.Context, in *ImportReadGroupSetsRequest, opts ...grpc.CallOption) (*longrunning.Operation, error) { |
| out := new(longrunning.Operation) |
| err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/ImportReadGroupSets", in, out, opts...) |
| if err != nil { |
| return nil, err |
| } |
| return out, nil |
| } |
| |
| func (c *readServiceV1Client) ExportReadGroupSet(ctx context.Context, in *ExportReadGroupSetRequest, opts ...grpc.CallOption) (*longrunning.Operation, error) { |
| out := new(longrunning.Operation) |
| err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/ExportReadGroupSet", in, out, opts...) |
| if err != nil { |
| return nil, err |
| } |
| return out, nil |
| } |
| |
| func (c *readServiceV1Client) SearchReadGroupSets(ctx context.Context, in *SearchReadGroupSetsRequest, opts ...grpc.CallOption) (*SearchReadGroupSetsResponse, error) { |
| out := new(SearchReadGroupSetsResponse) |
| err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/SearchReadGroupSets", in, out, opts...) |
| if err != nil { |
| return nil, err |
| } |
| return out, nil |
| } |
| |
| func (c *readServiceV1Client) UpdateReadGroupSet(ctx context.Context, in *UpdateReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error) { |
| out := new(ReadGroupSet) |
| err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/UpdateReadGroupSet", in, out, opts...) |
| if err != nil { |
| return nil, err |
| } |
| return out, nil |
| } |
| |
| func (c *readServiceV1Client) DeleteReadGroupSet(ctx context.Context, in *DeleteReadGroupSetRequest, opts ...grpc.CallOption) (*empty.Empty, error) { |
| out := new(empty.Empty) |
| err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/DeleteReadGroupSet", in, out, opts...) |
| if err != nil { |
| return nil, err |
| } |
| return out, nil |
| } |
| |
| func (c *readServiceV1Client) GetReadGroupSet(ctx context.Context, in *GetReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error) { |
| out := new(ReadGroupSet) |
| err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/GetReadGroupSet", in, out, opts...) |
| if err != nil { |
| return nil, err |
| } |
| return out, nil |
| } |
| |
| func (c *readServiceV1Client) ListCoverageBuckets(ctx context.Context, in *ListCoverageBucketsRequest, opts ...grpc.CallOption) (*ListCoverageBucketsResponse, error) { |
| out := new(ListCoverageBucketsResponse) |
| err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/ListCoverageBuckets", in, out, opts...) |
| if err != nil { |
| return nil, err |
| } |
| return out, nil |
| } |
| |
| func (c *readServiceV1Client) SearchReads(ctx context.Context, in *SearchReadsRequest, opts ...grpc.CallOption) (*SearchReadsResponse, error) { |
| out := new(SearchReadsResponse) |
| err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/SearchReads", in, out, opts...) |
| if err != nil { |
| return nil, err |
| } |
| return out, nil |
| } |
| |
| // ReadServiceV1Server is the server API for ReadServiceV1 service. |
| type ReadServiceV1Server interface { |
| // Creates read group sets by asynchronously importing the provided |
| // information. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // The caller must have WRITE permissions to the dataset. |
| // |
| // ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import |
| // |
| // - Tags will be converted to strings - tag types are not preserved |
| // - Comments (`@CO`) in the input file header will not be preserved |
| // - Original header order of references (`@SQ`) will not be preserved |
| // - Any reverse stranded unmapped reads will be reverse complemented, and |
| // their qualities (also the "BQ" and "OQ" tags, if any) will be reversed |
| // - Unmapped reads will be stripped of positional information (reference name |
| // and position) |
| ImportReadGroupSets(context.Context, *ImportReadGroupSetsRequest) (*longrunning.Operation, error) |
| // Exports a read group set to a BAM file in Google Cloud Storage. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Note that currently there may be some differences between exported BAM |
| // files and the original BAM file at the time of import. See |
| // [ImportReadGroupSets][google.genomics.v1.ReadServiceV1.ImportReadGroupSets] |
| // for caveats. |
| ExportReadGroupSet(context.Context, *ExportReadGroupSetRequest) (*longrunning.Operation, error) |
| // Searches for read group sets matching the criteria. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Implements |
| // [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135). |
| SearchReadGroupSets(context.Context, *SearchReadGroupSetsRequest) (*SearchReadGroupSetsResponse, error) |
| // Updates a read group set. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // This method supports patch semantics. |
| UpdateReadGroupSet(context.Context, *UpdateReadGroupSetRequest) (*ReadGroupSet, error) |
| // Deletes a read group set. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| DeleteReadGroupSet(context.Context, *DeleteReadGroupSetRequest) (*empty.Empty, error) |
| // Gets a read group set by ID. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| GetReadGroupSet(context.Context, *GetReadGroupSetRequest) (*ReadGroupSet, error) |
| // Lists fixed width coverage buckets for a read group set, each of which |
| // correspond to a range of a reference sequence. Each bucket summarizes |
| // coverage information across its corresponding genomic range. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Coverage is defined as the number of reads which are aligned to a given |
| // base in the reference sequence. Coverage buckets are available at several |
| // precomputed bucket widths, enabling retrieval of various coverage 'zoom |
| // levels'. The caller must have READ permissions for the target read group |
| // set. |
| ListCoverageBuckets(context.Context, *ListCoverageBucketsRequest) (*ListCoverageBucketsResponse, error) |
| // Gets a list of reads for one or more read group sets. |
| // |
| // For the definitions of read group sets and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Reads search operates over a genomic coordinate space of reference sequence |
| // & position defined over the reference sequences to which the requested |
| // read group sets are aligned. |
| // |
| // If a target positional range is specified, search returns all reads whose |
| // alignment to the reference genome overlap the range. A query which |
| // specifies only read group set IDs yields all reads in those read group |
| // sets, including unmapped reads. |
| // |
| // All reads returned (including reads on subsequent pages) are ordered by |
| // genomic coordinate (by reference sequence, then position). Reads with |
| // equivalent genomic coordinates are returned in an unspecified order. This |
| // order is consistent, such that two queries for the same content (regardless |
| // of page size) yield reads in the same order across their respective streams |
| // of paginated responses. |
| // |
| // Implements |
| // [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85). |
| SearchReads(context.Context, *SearchReadsRequest) (*SearchReadsResponse, error) |
| } |
| |
| // UnimplementedReadServiceV1Server can be embedded to have forward compatible implementations. |
| type UnimplementedReadServiceV1Server struct { |
| } |
| |
| func (*UnimplementedReadServiceV1Server) ImportReadGroupSets(ctx context.Context, req *ImportReadGroupSetsRequest) (*longrunning.Operation, error) { |
| return nil, status.Errorf(codes.Unimplemented, "method ImportReadGroupSets not implemented") |
| } |
| func (*UnimplementedReadServiceV1Server) ExportReadGroupSet(ctx context.Context, req *ExportReadGroupSetRequest) (*longrunning.Operation, error) { |
| return nil, status.Errorf(codes.Unimplemented, "method ExportReadGroupSet not implemented") |
| } |
| func (*UnimplementedReadServiceV1Server) SearchReadGroupSets(ctx context.Context, req *SearchReadGroupSetsRequest) (*SearchReadGroupSetsResponse, error) { |
| return nil, status.Errorf(codes.Unimplemented, "method SearchReadGroupSets not implemented") |
| } |
| func (*UnimplementedReadServiceV1Server) UpdateReadGroupSet(ctx context.Context, req *UpdateReadGroupSetRequest) (*ReadGroupSet, error) { |
| return nil, status.Errorf(codes.Unimplemented, "method UpdateReadGroupSet not implemented") |
| } |
| func (*UnimplementedReadServiceV1Server) DeleteReadGroupSet(ctx context.Context, req *DeleteReadGroupSetRequest) (*empty.Empty, error) { |
| return nil, status.Errorf(codes.Unimplemented, "method DeleteReadGroupSet not implemented") |
| } |
| func (*UnimplementedReadServiceV1Server) GetReadGroupSet(ctx context.Context, req *GetReadGroupSetRequest) (*ReadGroupSet, error) { |
| return nil, status.Errorf(codes.Unimplemented, "method GetReadGroupSet not implemented") |
| } |
| func (*UnimplementedReadServiceV1Server) ListCoverageBuckets(ctx context.Context, req *ListCoverageBucketsRequest) (*ListCoverageBucketsResponse, error) { |
| return nil, status.Errorf(codes.Unimplemented, "method ListCoverageBuckets not implemented") |
| } |
| func (*UnimplementedReadServiceV1Server) SearchReads(ctx context.Context, req *SearchReadsRequest) (*SearchReadsResponse, error) { |
| return nil, status.Errorf(codes.Unimplemented, "method SearchReads not implemented") |
| } |
| |
| func RegisterReadServiceV1Server(s *grpc.Server, srv ReadServiceV1Server) { |
| s.RegisterService(&_ReadServiceV1_serviceDesc, srv) |
| } |
| |
| func _ReadServiceV1_ImportReadGroupSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { |
| in := new(ImportReadGroupSetsRequest) |
| if err := dec(in); err != nil { |
| return nil, err |
| } |
| if interceptor == nil { |
| return srv.(ReadServiceV1Server).ImportReadGroupSets(ctx, in) |
| } |
| info := &grpc.UnaryServerInfo{ |
| Server: srv, |
| FullMethod: "/google.genomics.v1.ReadServiceV1/ImportReadGroupSets", |
| } |
| handler := func(ctx context.Context, req interface{}) (interface{}, error) { |
| return srv.(ReadServiceV1Server).ImportReadGroupSets(ctx, req.(*ImportReadGroupSetsRequest)) |
| } |
| return interceptor(ctx, in, info, handler) |
| } |
| |
| func _ReadServiceV1_ExportReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { |
| in := new(ExportReadGroupSetRequest) |
| if err := dec(in); err != nil { |
| return nil, err |
| } |
| if interceptor == nil { |
| return srv.(ReadServiceV1Server).ExportReadGroupSet(ctx, in) |
| } |
| info := &grpc.UnaryServerInfo{ |
| Server: srv, |
| FullMethod: "/google.genomics.v1.ReadServiceV1/ExportReadGroupSet", |
| } |
| handler := func(ctx context.Context, req interface{}) (interface{}, error) { |
| return srv.(ReadServiceV1Server).ExportReadGroupSet(ctx, req.(*ExportReadGroupSetRequest)) |
| } |
| return interceptor(ctx, in, info, handler) |
| } |
| |
| func _ReadServiceV1_SearchReadGroupSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { |
| in := new(SearchReadGroupSetsRequest) |
| if err := dec(in); err != nil { |
| return nil, err |
| } |
| if interceptor == nil { |
| return srv.(ReadServiceV1Server).SearchReadGroupSets(ctx, in) |
| } |
| info := &grpc.UnaryServerInfo{ |
| Server: srv, |
| FullMethod: "/google.genomics.v1.ReadServiceV1/SearchReadGroupSets", |
| } |
| handler := func(ctx context.Context, req interface{}) (interface{}, error) { |
| return srv.(ReadServiceV1Server).SearchReadGroupSets(ctx, req.(*SearchReadGroupSetsRequest)) |
| } |
| return interceptor(ctx, in, info, handler) |
| } |
| |
| func _ReadServiceV1_UpdateReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { |
| in := new(UpdateReadGroupSetRequest) |
| if err := dec(in); err != nil { |
| return nil, err |
| } |
| if interceptor == nil { |
| return srv.(ReadServiceV1Server).UpdateReadGroupSet(ctx, in) |
| } |
| info := &grpc.UnaryServerInfo{ |
| Server: srv, |
| FullMethod: "/google.genomics.v1.ReadServiceV1/UpdateReadGroupSet", |
| } |
| handler := func(ctx context.Context, req interface{}) (interface{}, error) { |
| return srv.(ReadServiceV1Server).UpdateReadGroupSet(ctx, req.(*UpdateReadGroupSetRequest)) |
| } |
| return interceptor(ctx, in, info, handler) |
| } |
| |
| func _ReadServiceV1_DeleteReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { |
| in := new(DeleteReadGroupSetRequest) |
| if err := dec(in); err != nil { |
| return nil, err |
| } |
| if interceptor == nil { |
| return srv.(ReadServiceV1Server).DeleteReadGroupSet(ctx, in) |
| } |
| info := &grpc.UnaryServerInfo{ |
| Server: srv, |
| FullMethod: "/google.genomics.v1.ReadServiceV1/DeleteReadGroupSet", |
| } |
| handler := func(ctx context.Context, req interface{}) (interface{}, error) { |
| return srv.(ReadServiceV1Server).DeleteReadGroupSet(ctx, req.(*DeleteReadGroupSetRequest)) |
| } |
| return interceptor(ctx, in, info, handler) |
| } |
| |
| func _ReadServiceV1_GetReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { |
| in := new(GetReadGroupSetRequest) |
| if err := dec(in); err != nil { |
| return nil, err |
| } |
| if interceptor == nil { |
| return srv.(ReadServiceV1Server).GetReadGroupSet(ctx, in) |
| } |
| info := &grpc.UnaryServerInfo{ |
| Server: srv, |
| FullMethod: "/google.genomics.v1.ReadServiceV1/GetReadGroupSet", |
| } |
| handler := func(ctx context.Context, req interface{}) (interface{}, error) { |
| return srv.(ReadServiceV1Server).GetReadGroupSet(ctx, req.(*GetReadGroupSetRequest)) |
| } |
| return interceptor(ctx, in, info, handler) |
| } |
| |
| func _ReadServiceV1_ListCoverageBuckets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { |
| in := new(ListCoverageBucketsRequest) |
| if err := dec(in); err != nil { |
| return nil, err |
| } |
| if interceptor == nil { |
| return srv.(ReadServiceV1Server).ListCoverageBuckets(ctx, in) |
| } |
| info := &grpc.UnaryServerInfo{ |
| Server: srv, |
| FullMethod: "/google.genomics.v1.ReadServiceV1/ListCoverageBuckets", |
| } |
| handler := func(ctx context.Context, req interface{}) (interface{}, error) { |
| return srv.(ReadServiceV1Server).ListCoverageBuckets(ctx, req.(*ListCoverageBucketsRequest)) |
| } |
| return interceptor(ctx, in, info, handler) |
| } |
| |
| func _ReadServiceV1_SearchReads_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { |
| in := new(SearchReadsRequest) |
| if err := dec(in); err != nil { |
| return nil, err |
| } |
| if interceptor == nil { |
| return srv.(ReadServiceV1Server).SearchReads(ctx, in) |
| } |
| info := &grpc.UnaryServerInfo{ |
| Server: srv, |
| FullMethod: "/google.genomics.v1.ReadServiceV1/SearchReads", |
| } |
| handler := func(ctx context.Context, req interface{}) (interface{}, error) { |
| return srv.(ReadServiceV1Server).SearchReads(ctx, req.(*SearchReadsRequest)) |
| } |
| return interceptor(ctx, in, info, handler) |
| } |
| |
| var _ReadServiceV1_serviceDesc = grpc.ServiceDesc{ |
| ServiceName: "google.genomics.v1.ReadServiceV1", |
| HandlerType: (*ReadServiceV1Server)(nil), |
| Methods: []grpc.MethodDesc{ |
| { |
| MethodName: "ImportReadGroupSets", |
| Handler: _ReadServiceV1_ImportReadGroupSets_Handler, |
| }, |
| { |
| MethodName: "ExportReadGroupSet", |
| Handler: _ReadServiceV1_ExportReadGroupSet_Handler, |
| }, |
| { |
| MethodName: "SearchReadGroupSets", |
| Handler: _ReadServiceV1_SearchReadGroupSets_Handler, |
| }, |
| { |
| MethodName: "UpdateReadGroupSet", |
| Handler: _ReadServiceV1_UpdateReadGroupSet_Handler, |
| }, |
| { |
| MethodName: "DeleteReadGroupSet", |
| Handler: _ReadServiceV1_DeleteReadGroupSet_Handler, |
| }, |
| { |
| MethodName: "GetReadGroupSet", |
| Handler: _ReadServiceV1_GetReadGroupSet_Handler, |
| }, |
| { |
| MethodName: "ListCoverageBuckets", |
| Handler: _ReadServiceV1_ListCoverageBuckets_Handler, |
| }, |
| { |
| MethodName: "SearchReads", |
| Handler: _ReadServiceV1_SearchReads_Handler, |
| }, |
| }, |
| Streams: []grpc.StreamDesc{}, |
| Metadata: "google/genomics/v1/reads.proto", |
| } |