| // Copyright 2016 Google Inc. |
| // |
| // Licensed under the Apache License, Version 2.0 (the "License"); |
| // you may not use this file except in compliance with the License. |
| // You may obtain a copy of the License at |
| // |
| // http://www.apache.org/licenses/LICENSE-2.0 |
| // |
| // Unless required by applicable law or agreed to in writing, software |
| // distributed under the License is distributed on an "AS IS" BASIS, |
| // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. |
| // See the License for the specific language governing permissions and |
| // limitations under the License. |
| |
| // Code generated by protoc-gen-go. DO NOT EDIT. |
| // versions: |
| // protoc-gen-go v1.22.0 |
| // protoc v3.12.2 |
| // source: google/genomics/v1/references.proto |
| |
| package genomics |
| |
| import ( |
| context "context" |
| reflect "reflect" |
| sync "sync" |
| |
| proto "github.com/golang/protobuf/proto" |
| _ "google.golang.org/genproto/googleapis/api/annotations" |
| grpc "google.golang.org/grpc" |
| codes "google.golang.org/grpc/codes" |
| status "google.golang.org/grpc/status" |
| protoreflect "google.golang.org/protobuf/reflect/protoreflect" |
| protoimpl "google.golang.org/protobuf/runtime/protoimpl" |
| ) |
| |
| const ( |
| // Verify that this generated code is sufficiently up-to-date. |
| _ = protoimpl.EnforceVersion(20 - protoimpl.MinVersion) |
| // Verify that runtime/protoimpl is sufficiently up-to-date. |
| _ = protoimpl.EnforceVersion(protoimpl.MaxVersion - 20) |
| ) |
| |
| // This is a compile-time assertion that a sufficiently up-to-date version |
| // of the legacy proto package is being used. |
| const _ = proto.ProtoPackageIsVersion4 |
| |
| // A reference is a canonical assembled DNA sequence, intended to act as a |
| // reference coordinate space for other genomic annotations. A single reference |
| // might represent the human chromosome 1 or mitochandrial DNA, for instance. A |
| // reference belongs to one or more reference sets. |
| // |
| // For more genomics resource definitions, see [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| type Reference struct { |
| state protoimpl.MessageState |
| sizeCache protoimpl.SizeCache |
| unknownFields protoimpl.UnknownFields |
| |
| // The server-generated reference ID, unique across all references. |
| Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"` |
| // The length of this reference's sequence. |
| Length int64 `protobuf:"varint,2,opt,name=length,proto3" json:"length,omitempty"` |
| // MD5 of the upper-case sequence excluding all whitespace characters (this |
| // is equivalent to SQ:M5 in SAM). This value is represented in lower case |
| // hexadecimal format. |
| Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum,proto3" json:"md5checksum,omitempty"` |
| // The name of this reference, for example `22`. |
| Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"` |
| // The URI from which the sequence was obtained. Typically specifies a FASTA |
| // format file. |
| SourceUri string `protobuf:"bytes,5,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"` |
| // All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally |
| // with a version number, for example `GCF_000001405.26`. |
| SourceAccessions []string `protobuf:"bytes,6,rep,name=source_accessions,json=sourceAccessions,proto3" json:"source_accessions,omitempty"` |
| // ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human. |
| NcbiTaxonId int32 `protobuf:"varint,7,opt,name=ncbi_taxon_id,json=ncbiTaxonId,proto3" json:"ncbi_taxon_id,omitempty"` |
| } |
| |
| func (x *Reference) Reset() { |
| *x = Reference{} |
| if protoimpl.UnsafeEnabled { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[0] |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| ms.StoreMessageInfo(mi) |
| } |
| } |
| |
| func (x *Reference) String() string { |
| return protoimpl.X.MessageStringOf(x) |
| } |
| |
| func (*Reference) ProtoMessage() {} |
| |
| func (x *Reference) ProtoReflect() protoreflect.Message { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[0] |
| if protoimpl.UnsafeEnabled && x != nil { |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| if ms.LoadMessageInfo() == nil { |
| ms.StoreMessageInfo(mi) |
| } |
| return ms |
| } |
| return mi.MessageOf(x) |
| } |
| |
| // Deprecated: Use Reference.ProtoReflect.Descriptor instead. |
| func (*Reference) Descriptor() ([]byte, []int) { |
| return file_google_genomics_v1_references_proto_rawDescGZIP(), []int{0} |
| } |
| |
| func (x *Reference) GetId() string { |
| if x != nil { |
| return x.Id |
| } |
| return "" |
| } |
| |
| func (x *Reference) GetLength() int64 { |
| if x != nil { |
| return x.Length |
| } |
| return 0 |
| } |
| |
| func (x *Reference) GetMd5Checksum() string { |
| if x != nil { |
| return x.Md5Checksum |
| } |
| return "" |
| } |
| |
| func (x *Reference) GetName() string { |
| if x != nil { |
| return x.Name |
| } |
| return "" |
| } |
| |
| func (x *Reference) GetSourceUri() string { |
| if x != nil { |
| return x.SourceUri |
| } |
| return "" |
| } |
| |
| func (x *Reference) GetSourceAccessions() []string { |
| if x != nil { |
| return x.SourceAccessions |
| } |
| return nil |
| } |
| |
| func (x *Reference) GetNcbiTaxonId() int32 { |
| if x != nil { |
| return x.NcbiTaxonId |
| } |
| return 0 |
| } |
| |
| // A reference set is a set of references which typically comprise a reference |
| // assembly for a species, such as `GRCh38` which is representative |
| // of the human genome. A reference set defines a common coordinate space for |
| // comparing reference-aligned experimental data. A reference set contains 1 or |
| // more references. |
| // |
| // For more genomics resource definitions, see [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| type ReferenceSet struct { |
| state protoimpl.MessageState |
| sizeCache protoimpl.SizeCache |
| unknownFields protoimpl.UnknownFields |
| |
| // The server-generated reference set ID, unique across all reference sets. |
| Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"` |
| // The IDs of the reference objects that are part of this set. |
| // `Reference.md5checksum` must be unique within this set. |
| ReferenceIds []string `protobuf:"bytes,2,rep,name=reference_ids,json=referenceIds,proto3" json:"reference_ids,omitempty"` |
| // Order-independent MD5 checksum which identifies this reference set. The |
| // checksum is computed by sorting all lower case hexidecimal string |
| // `reference.md5checksum` (for all reference in this set) in |
| // ascending lexicographic order, concatenating, and taking the MD5 of that |
| // value. The resulting value is represented in lower case hexadecimal format. |
| Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum,proto3" json:"md5checksum,omitempty"` |
| // ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human) |
| // indicating the species which this reference set is intended to model. Note |
| // that contained references may specify a different `ncbiTaxonId`, as |
| // assemblies may contain reference sequences which do not belong to the |
| // modeled species, for example EBV in a human reference genome. |
| NcbiTaxonId int32 `protobuf:"varint,4,opt,name=ncbi_taxon_id,json=ncbiTaxonId,proto3" json:"ncbi_taxon_id,omitempty"` |
| // Free text description of this reference set. |
| Description string `protobuf:"bytes,5,opt,name=description,proto3" json:"description,omitempty"` |
| // Public id of this reference set, such as `GRCh37`. |
| AssemblyId string `protobuf:"bytes,6,opt,name=assembly_id,json=assemblyId,proto3" json:"assembly_id,omitempty"` |
| // The URI from which the references were obtained. |
| SourceUri string `protobuf:"bytes,7,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"` |
| // All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally |
| // with a version number, for example `NC_000001.11`. |
| SourceAccessions []string `protobuf:"bytes,8,rep,name=source_accessions,json=sourceAccessions,proto3" json:"source_accessions,omitempty"` |
| } |
| |
| func (x *ReferenceSet) Reset() { |
| *x = ReferenceSet{} |
| if protoimpl.UnsafeEnabled { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[1] |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| ms.StoreMessageInfo(mi) |
| } |
| } |
| |
| func (x *ReferenceSet) String() string { |
| return protoimpl.X.MessageStringOf(x) |
| } |
| |
| func (*ReferenceSet) ProtoMessage() {} |
| |
| func (x *ReferenceSet) ProtoReflect() protoreflect.Message { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[1] |
| if protoimpl.UnsafeEnabled && x != nil { |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| if ms.LoadMessageInfo() == nil { |
| ms.StoreMessageInfo(mi) |
| } |
| return ms |
| } |
| return mi.MessageOf(x) |
| } |
| |
| // Deprecated: Use ReferenceSet.ProtoReflect.Descriptor instead. |
| func (*ReferenceSet) Descriptor() ([]byte, []int) { |
| return file_google_genomics_v1_references_proto_rawDescGZIP(), []int{1} |
| } |
| |
| func (x *ReferenceSet) GetId() string { |
| if x != nil { |
| return x.Id |
| } |
| return "" |
| } |
| |
| func (x *ReferenceSet) GetReferenceIds() []string { |
| if x != nil { |
| return x.ReferenceIds |
| } |
| return nil |
| } |
| |
| func (x *ReferenceSet) GetMd5Checksum() string { |
| if x != nil { |
| return x.Md5Checksum |
| } |
| return "" |
| } |
| |
| func (x *ReferenceSet) GetNcbiTaxonId() int32 { |
| if x != nil { |
| return x.NcbiTaxonId |
| } |
| return 0 |
| } |
| |
| func (x *ReferenceSet) GetDescription() string { |
| if x != nil { |
| return x.Description |
| } |
| return "" |
| } |
| |
| func (x *ReferenceSet) GetAssemblyId() string { |
| if x != nil { |
| return x.AssemblyId |
| } |
| return "" |
| } |
| |
| func (x *ReferenceSet) GetSourceUri() string { |
| if x != nil { |
| return x.SourceUri |
| } |
| return "" |
| } |
| |
| func (x *ReferenceSet) GetSourceAccessions() []string { |
| if x != nil { |
| return x.SourceAccessions |
| } |
| return nil |
| } |
| |
| type SearchReferenceSetsRequest struct { |
| state protoimpl.MessageState |
| sizeCache protoimpl.SizeCache |
| unknownFields protoimpl.UnknownFields |
| |
| // If present, return reference sets for which the |
| // [md5checksum][google.genomics.v1.ReferenceSet.md5checksum] matches exactly. |
| Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums,proto3" json:"md5checksums,omitempty"` |
| // If present, return reference sets for which a prefix of any of |
| // [sourceAccessions][google.genomics.v1.ReferenceSet.source_accessions] |
| // match any of these strings. Accession numbers typically have a main number |
| // and a version, for example `NC_000001.11`. |
| Accessions []string `protobuf:"bytes,2,rep,name=accessions,proto3" json:"accessions,omitempty"` |
| // If present, return reference sets for which a substring of their |
| // `assemblyId` matches this string (case insensitive). |
| AssemblyId string `protobuf:"bytes,3,opt,name=assembly_id,json=assemblyId,proto3" json:"assembly_id,omitempty"` |
| // The continuation token, which is used to page through large result sets. |
| // To get the next page of results, set this parameter to the value of |
| // `nextPageToken` from the previous response. |
| PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"` |
| // The maximum number of results to return in a single page. If unspecified, |
| // defaults to 1024. The maximum value is 4096. |
| PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"` |
| } |
| |
| func (x *SearchReferenceSetsRequest) Reset() { |
| *x = SearchReferenceSetsRequest{} |
| if protoimpl.UnsafeEnabled { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[2] |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| ms.StoreMessageInfo(mi) |
| } |
| } |
| |
| func (x *SearchReferenceSetsRequest) String() string { |
| return protoimpl.X.MessageStringOf(x) |
| } |
| |
| func (*SearchReferenceSetsRequest) ProtoMessage() {} |
| |
| func (x *SearchReferenceSetsRequest) ProtoReflect() protoreflect.Message { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[2] |
| if protoimpl.UnsafeEnabled && x != nil { |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| if ms.LoadMessageInfo() == nil { |
| ms.StoreMessageInfo(mi) |
| } |
| return ms |
| } |
| return mi.MessageOf(x) |
| } |
| |
| // Deprecated: Use SearchReferenceSetsRequest.ProtoReflect.Descriptor instead. |
| func (*SearchReferenceSetsRequest) Descriptor() ([]byte, []int) { |
| return file_google_genomics_v1_references_proto_rawDescGZIP(), []int{2} |
| } |
| |
| func (x *SearchReferenceSetsRequest) GetMd5Checksums() []string { |
| if x != nil { |
| return x.Md5Checksums |
| } |
| return nil |
| } |
| |
| func (x *SearchReferenceSetsRequest) GetAccessions() []string { |
| if x != nil { |
| return x.Accessions |
| } |
| return nil |
| } |
| |
| func (x *SearchReferenceSetsRequest) GetAssemblyId() string { |
| if x != nil { |
| return x.AssemblyId |
| } |
| return "" |
| } |
| |
| func (x *SearchReferenceSetsRequest) GetPageToken() string { |
| if x != nil { |
| return x.PageToken |
| } |
| return "" |
| } |
| |
| func (x *SearchReferenceSetsRequest) GetPageSize() int32 { |
| if x != nil { |
| return x.PageSize |
| } |
| return 0 |
| } |
| |
| type SearchReferenceSetsResponse struct { |
| state protoimpl.MessageState |
| sizeCache protoimpl.SizeCache |
| unknownFields protoimpl.UnknownFields |
| |
| // The matching references sets. |
| ReferenceSets []*ReferenceSet `protobuf:"bytes,1,rep,name=reference_sets,json=referenceSets,proto3" json:"reference_sets,omitempty"` |
| // The continuation token, which is used to page through large result sets. |
| // Provide this value in a subsequent request to return the next page of |
| // results. This field will be empty if there aren't any additional results. |
| NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"` |
| } |
| |
| func (x *SearchReferenceSetsResponse) Reset() { |
| *x = SearchReferenceSetsResponse{} |
| if protoimpl.UnsafeEnabled { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[3] |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| ms.StoreMessageInfo(mi) |
| } |
| } |
| |
| func (x *SearchReferenceSetsResponse) String() string { |
| return protoimpl.X.MessageStringOf(x) |
| } |
| |
| func (*SearchReferenceSetsResponse) ProtoMessage() {} |
| |
| func (x *SearchReferenceSetsResponse) ProtoReflect() protoreflect.Message { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[3] |
| if protoimpl.UnsafeEnabled && x != nil { |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| if ms.LoadMessageInfo() == nil { |
| ms.StoreMessageInfo(mi) |
| } |
| return ms |
| } |
| return mi.MessageOf(x) |
| } |
| |
| // Deprecated: Use SearchReferenceSetsResponse.ProtoReflect.Descriptor instead. |
| func (*SearchReferenceSetsResponse) Descriptor() ([]byte, []int) { |
| return file_google_genomics_v1_references_proto_rawDescGZIP(), []int{3} |
| } |
| |
| func (x *SearchReferenceSetsResponse) GetReferenceSets() []*ReferenceSet { |
| if x != nil { |
| return x.ReferenceSets |
| } |
| return nil |
| } |
| |
| func (x *SearchReferenceSetsResponse) GetNextPageToken() string { |
| if x != nil { |
| return x.NextPageToken |
| } |
| return "" |
| } |
| |
| type GetReferenceSetRequest struct { |
| state protoimpl.MessageState |
| sizeCache protoimpl.SizeCache |
| unknownFields protoimpl.UnknownFields |
| |
| // The ID of the reference set. |
| ReferenceSetId string `protobuf:"bytes,1,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"` |
| } |
| |
| func (x *GetReferenceSetRequest) Reset() { |
| *x = GetReferenceSetRequest{} |
| if protoimpl.UnsafeEnabled { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[4] |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| ms.StoreMessageInfo(mi) |
| } |
| } |
| |
| func (x *GetReferenceSetRequest) String() string { |
| return protoimpl.X.MessageStringOf(x) |
| } |
| |
| func (*GetReferenceSetRequest) ProtoMessage() {} |
| |
| func (x *GetReferenceSetRequest) ProtoReflect() protoreflect.Message { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[4] |
| if protoimpl.UnsafeEnabled && x != nil { |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| if ms.LoadMessageInfo() == nil { |
| ms.StoreMessageInfo(mi) |
| } |
| return ms |
| } |
| return mi.MessageOf(x) |
| } |
| |
| // Deprecated: Use GetReferenceSetRequest.ProtoReflect.Descriptor instead. |
| func (*GetReferenceSetRequest) Descriptor() ([]byte, []int) { |
| return file_google_genomics_v1_references_proto_rawDescGZIP(), []int{4} |
| } |
| |
| func (x *GetReferenceSetRequest) GetReferenceSetId() string { |
| if x != nil { |
| return x.ReferenceSetId |
| } |
| return "" |
| } |
| |
| type SearchReferencesRequest struct { |
| state protoimpl.MessageState |
| sizeCache protoimpl.SizeCache |
| unknownFields protoimpl.UnknownFields |
| |
| // If present, return references for which the |
| // [md5checksum][google.genomics.v1.Reference.md5checksum] matches exactly. |
| Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums,proto3" json:"md5checksums,omitempty"` |
| // If present, return references for which a prefix of any of |
| // [sourceAccessions][google.genomics.v1.Reference.source_accessions] match |
| // any of these strings. Accession numbers typically have a main number and a |
| // version, for example `GCF_000001405.26`. |
| Accessions []string `protobuf:"bytes,2,rep,name=accessions,proto3" json:"accessions,omitempty"` |
| // If present, return only references which belong to this reference set. |
| ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"` |
| // The continuation token, which is used to page through large result sets. |
| // To get the next page of results, set this parameter to the value of |
| // `nextPageToken` from the previous response. |
| PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"` |
| // The maximum number of results to return in a single page. If unspecified, |
| // defaults to 1024. The maximum value is 4096. |
| PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"` |
| } |
| |
| func (x *SearchReferencesRequest) Reset() { |
| *x = SearchReferencesRequest{} |
| if protoimpl.UnsafeEnabled { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[5] |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| ms.StoreMessageInfo(mi) |
| } |
| } |
| |
| func (x *SearchReferencesRequest) String() string { |
| return protoimpl.X.MessageStringOf(x) |
| } |
| |
| func (*SearchReferencesRequest) ProtoMessage() {} |
| |
| func (x *SearchReferencesRequest) ProtoReflect() protoreflect.Message { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[5] |
| if protoimpl.UnsafeEnabled && x != nil { |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| if ms.LoadMessageInfo() == nil { |
| ms.StoreMessageInfo(mi) |
| } |
| return ms |
| } |
| return mi.MessageOf(x) |
| } |
| |
| // Deprecated: Use SearchReferencesRequest.ProtoReflect.Descriptor instead. |
| func (*SearchReferencesRequest) Descriptor() ([]byte, []int) { |
| return file_google_genomics_v1_references_proto_rawDescGZIP(), []int{5} |
| } |
| |
| func (x *SearchReferencesRequest) GetMd5Checksums() []string { |
| if x != nil { |
| return x.Md5Checksums |
| } |
| return nil |
| } |
| |
| func (x *SearchReferencesRequest) GetAccessions() []string { |
| if x != nil { |
| return x.Accessions |
| } |
| return nil |
| } |
| |
| func (x *SearchReferencesRequest) GetReferenceSetId() string { |
| if x != nil { |
| return x.ReferenceSetId |
| } |
| return "" |
| } |
| |
| func (x *SearchReferencesRequest) GetPageToken() string { |
| if x != nil { |
| return x.PageToken |
| } |
| return "" |
| } |
| |
| func (x *SearchReferencesRequest) GetPageSize() int32 { |
| if x != nil { |
| return x.PageSize |
| } |
| return 0 |
| } |
| |
| type SearchReferencesResponse struct { |
| state protoimpl.MessageState |
| sizeCache protoimpl.SizeCache |
| unknownFields protoimpl.UnknownFields |
| |
| // The matching references. |
| References []*Reference `protobuf:"bytes,1,rep,name=references,proto3" json:"references,omitempty"` |
| // The continuation token, which is used to page through large result sets. |
| // Provide this value in a subsequent request to return the next page of |
| // results. This field will be empty if there aren't any additional results. |
| NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"` |
| } |
| |
| func (x *SearchReferencesResponse) Reset() { |
| *x = SearchReferencesResponse{} |
| if protoimpl.UnsafeEnabled { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[6] |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| ms.StoreMessageInfo(mi) |
| } |
| } |
| |
| func (x *SearchReferencesResponse) String() string { |
| return protoimpl.X.MessageStringOf(x) |
| } |
| |
| func (*SearchReferencesResponse) ProtoMessage() {} |
| |
| func (x *SearchReferencesResponse) ProtoReflect() protoreflect.Message { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[6] |
| if protoimpl.UnsafeEnabled && x != nil { |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| if ms.LoadMessageInfo() == nil { |
| ms.StoreMessageInfo(mi) |
| } |
| return ms |
| } |
| return mi.MessageOf(x) |
| } |
| |
| // Deprecated: Use SearchReferencesResponse.ProtoReflect.Descriptor instead. |
| func (*SearchReferencesResponse) Descriptor() ([]byte, []int) { |
| return file_google_genomics_v1_references_proto_rawDescGZIP(), []int{6} |
| } |
| |
| func (x *SearchReferencesResponse) GetReferences() []*Reference { |
| if x != nil { |
| return x.References |
| } |
| return nil |
| } |
| |
| func (x *SearchReferencesResponse) GetNextPageToken() string { |
| if x != nil { |
| return x.NextPageToken |
| } |
| return "" |
| } |
| |
| type GetReferenceRequest struct { |
| state protoimpl.MessageState |
| sizeCache protoimpl.SizeCache |
| unknownFields protoimpl.UnknownFields |
| |
| // The ID of the reference. |
| ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"` |
| } |
| |
| func (x *GetReferenceRequest) Reset() { |
| *x = GetReferenceRequest{} |
| if protoimpl.UnsafeEnabled { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[7] |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| ms.StoreMessageInfo(mi) |
| } |
| } |
| |
| func (x *GetReferenceRequest) String() string { |
| return protoimpl.X.MessageStringOf(x) |
| } |
| |
| func (*GetReferenceRequest) ProtoMessage() {} |
| |
| func (x *GetReferenceRequest) ProtoReflect() protoreflect.Message { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[7] |
| if protoimpl.UnsafeEnabled && x != nil { |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| if ms.LoadMessageInfo() == nil { |
| ms.StoreMessageInfo(mi) |
| } |
| return ms |
| } |
| return mi.MessageOf(x) |
| } |
| |
| // Deprecated: Use GetReferenceRequest.ProtoReflect.Descriptor instead. |
| func (*GetReferenceRequest) Descriptor() ([]byte, []int) { |
| return file_google_genomics_v1_references_proto_rawDescGZIP(), []int{7} |
| } |
| |
| func (x *GetReferenceRequest) GetReferenceId() string { |
| if x != nil { |
| return x.ReferenceId |
| } |
| return "" |
| } |
| |
| type ListBasesRequest struct { |
| state protoimpl.MessageState |
| sizeCache protoimpl.SizeCache |
| unknownFields protoimpl.UnknownFields |
| |
| // The ID of the reference. |
| ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"` |
| // The start position (0-based) of this query. Defaults to 0. |
| Start int64 `protobuf:"varint,2,opt,name=start,proto3" json:"start,omitempty"` |
| // The end position (0-based, exclusive) of this query. Defaults to the length |
| // of this reference. |
| End int64 `protobuf:"varint,3,opt,name=end,proto3" json:"end,omitempty"` |
| // The continuation token, which is used to page through large result sets. |
| // To get the next page of results, set this parameter to the value of |
| // `nextPageToken` from the previous response. |
| PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"` |
| // The maximum number of bases to return in a single page. If unspecified, |
| // defaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base |
| // pairs). |
| PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"` |
| } |
| |
| func (x *ListBasesRequest) Reset() { |
| *x = ListBasesRequest{} |
| if protoimpl.UnsafeEnabled { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[8] |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| ms.StoreMessageInfo(mi) |
| } |
| } |
| |
| func (x *ListBasesRequest) String() string { |
| return protoimpl.X.MessageStringOf(x) |
| } |
| |
| func (*ListBasesRequest) ProtoMessage() {} |
| |
| func (x *ListBasesRequest) ProtoReflect() protoreflect.Message { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[8] |
| if protoimpl.UnsafeEnabled && x != nil { |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| if ms.LoadMessageInfo() == nil { |
| ms.StoreMessageInfo(mi) |
| } |
| return ms |
| } |
| return mi.MessageOf(x) |
| } |
| |
| // Deprecated: Use ListBasesRequest.ProtoReflect.Descriptor instead. |
| func (*ListBasesRequest) Descriptor() ([]byte, []int) { |
| return file_google_genomics_v1_references_proto_rawDescGZIP(), []int{8} |
| } |
| |
| func (x *ListBasesRequest) GetReferenceId() string { |
| if x != nil { |
| return x.ReferenceId |
| } |
| return "" |
| } |
| |
| func (x *ListBasesRequest) GetStart() int64 { |
| if x != nil { |
| return x.Start |
| } |
| return 0 |
| } |
| |
| func (x *ListBasesRequest) GetEnd() int64 { |
| if x != nil { |
| return x.End |
| } |
| return 0 |
| } |
| |
| func (x *ListBasesRequest) GetPageToken() string { |
| if x != nil { |
| return x.PageToken |
| } |
| return "" |
| } |
| |
| func (x *ListBasesRequest) GetPageSize() int32 { |
| if x != nil { |
| return x.PageSize |
| } |
| return 0 |
| } |
| |
| type ListBasesResponse struct { |
| state protoimpl.MessageState |
| sizeCache protoimpl.SizeCache |
| unknownFields protoimpl.UnknownFields |
| |
| // The offset position (0-based) of the given `sequence` from the |
| // start of this `Reference`. This value will differ for each page |
| // in a paginated request. |
| Offset int64 `protobuf:"varint,1,opt,name=offset,proto3" json:"offset,omitempty"` |
| // A substring of the bases that make up this reference. |
| Sequence string `protobuf:"bytes,2,opt,name=sequence,proto3" json:"sequence,omitempty"` |
| // The continuation token, which is used to page through large result sets. |
| // Provide this value in a subsequent request to return the next page of |
| // results. This field will be empty if there aren't any additional results. |
| NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"` |
| } |
| |
| func (x *ListBasesResponse) Reset() { |
| *x = ListBasesResponse{} |
| if protoimpl.UnsafeEnabled { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[9] |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| ms.StoreMessageInfo(mi) |
| } |
| } |
| |
| func (x *ListBasesResponse) String() string { |
| return protoimpl.X.MessageStringOf(x) |
| } |
| |
| func (*ListBasesResponse) ProtoMessage() {} |
| |
| func (x *ListBasesResponse) ProtoReflect() protoreflect.Message { |
| mi := &file_google_genomics_v1_references_proto_msgTypes[9] |
| if protoimpl.UnsafeEnabled && x != nil { |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| if ms.LoadMessageInfo() == nil { |
| ms.StoreMessageInfo(mi) |
| } |
| return ms |
| } |
| return mi.MessageOf(x) |
| } |
| |
| // Deprecated: Use ListBasesResponse.ProtoReflect.Descriptor instead. |
| func (*ListBasesResponse) Descriptor() ([]byte, []int) { |
| return file_google_genomics_v1_references_proto_rawDescGZIP(), []int{9} |
| } |
| |
| func (x *ListBasesResponse) GetOffset() int64 { |
| if x != nil { |
| return x.Offset |
| } |
| return 0 |
| } |
| |
| func (x *ListBasesResponse) GetSequence() string { |
| if x != nil { |
| return x.Sequence |
| } |
| return "" |
| } |
| |
| func (x *ListBasesResponse) GetNextPageToken() string { |
| if x != nil { |
| return x.NextPageToken |
| } |
| return "" |
| } |
| |
| var File_google_genomics_v1_references_proto protoreflect.FileDescriptor |
| |
| var file_google_genomics_v1_references_proto_rawDesc = []byte{ |
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| } |
| |
| var ( |
| file_google_genomics_v1_references_proto_rawDescOnce sync.Once |
| file_google_genomics_v1_references_proto_rawDescData = file_google_genomics_v1_references_proto_rawDesc |
| ) |
| |
| func file_google_genomics_v1_references_proto_rawDescGZIP() []byte { |
| file_google_genomics_v1_references_proto_rawDescOnce.Do(func() { |
| file_google_genomics_v1_references_proto_rawDescData = protoimpl.X.CompressGZIP(file_google_genomics_v1_references_proto_rawDescData) |
| }) |
| return file_google_genomics_v1_references_proto_rawDescData |
| } |
| |
| var file_google_genomics_v1_references_proto_msgTypes = make([]protoimpl.MessageInfo, 10) |
| var file_google_genomics_v1_references_proto_goTypes = []interface{}{ |
| (*Reference)(nil), // 0: google.genomics.v1.Reference |
| (*ReferenceSet)(nil), // 1: google.genomics.v1.ReferenceSet |
| (*SearchReferenceSetsRequest)(nil), // 2: google.genomics.v1.SearchReferenceSetsRequest |
| (*SearchReferenceSetsResponse)(nil), // 3: google.genomics.v1.SearchReferenceSetsResponse |
| (*GetReferenceSetRequest)(nil), // 4: google.genomics.v1.GetReferenceSetRequest |
| (*SearchReferencesRequest)(nil), // 5: google.genomics.v1.SearchReferencesRequest |
| (*SearchReferencesResponse)(nil), // 6: google.genomics.v1.SearchReferencesResponse |
| (*GetReferenceRequest)(nil), // 7: google.genomics.v1.GetReferenceRequest |
| (*ListBasesRequest)(nil), // 8: google.genomics.v1.ListBasesRequest |
| (*ListBasesResponse)(nil), // 9: google.genomics.v1.ListBasesResponse |
| } |
| var file_google_genomics_v1_references_proto_depIdxs = []int32{ |
| 1, // 0: google.genomics.v1.SearchReferenceSetsResponse.reference_sets:type_name -> google.genomics.v1.ReferenceSet |
| 0, // 1: google.genomics.v1.SearchReferencesResponse.references:type_name -> google.genomics.v1.Reference |
| 2, // 2: google.genomics.v1.ReferenceServiceV1.SearchReferenceSets:input_type -> google.genomics.v1.SearchReferenceSetsRequest |
| 4, // 3: google.genomics.v1.ReferenceServiceV1.GetReferenceSet:input_type -> google.genomics.v1.GetReferenceSetRequest |
| 5, // 4: google.genomics.v1.ReferenceServiceV1.SearchReferences:input_type -> google.genomics.v1.SearchReferencesRequest |
| 7, // 5: google.genomics.v1.ReferenceServiceV1.GetReference:input_type -> google.genomics.v1.GetReferenceRequest |
| 8, // 6: google.genomics.v1.ReferenceServiceV1.ListBases:input_type -> google.genomics.v1.ListBasesRequest |
| 3, // 7: google.genomics.v1.ReferenceServiceV1.SearchReferenceSets:output_type -> google.genomics.v1.SearchReferenceSetsResponse |
| 1, // 8: google.genomics.v1.ReferenceServiceV1.GetReferenceSet:output_type -> google.genomics.v1.ReferenceSet |
| 6, // 9: google.genomics.v1.ReferenceServiceV1.SearchReferences:output_type -> google.genomics.v1.SearchReferencesResponse |
| 0, // 10: google.genomics.v1.ReferenceServiceV1.GetReference:output_type -> google.genomics.v1.Reference |
| 9, // 11: google.genomics.v1.ReferenceServiceV1.ListBases:output_type -> google.genomics.v1.ListBasesResponse |
| 7, // [7:12] is the sub-list for method output_type |
| 2, // [2:7] is the sub-list for method input_type |
| 2, // [2:2] is the sub-list for extension type_name |
| 2, // [2:2] is the sub-list for extension extendee |
| 0, // [0:2] is the sub-list for field type_name |
| } |
| |
| func init() { file_google_genomics_v1_references_proto_init() } |
| func file_google_genomics_v1_references_proto_init() { |
| if File_google_genomics_v1_references_proto != nil { |
| return |
| } |
| if !protoimpl.UnsafeEnabled { |
| file_google_genomics_v1_references_proto_msgTypes[0].Exporter = func(v interface{}, i int) interface{} { |
| switch v := v.(*Reference); i { |
| case 0: |
| return &v.state |
| case 1: |
| return &v.sizeCache |
| case 2: |
| return &v.unknownFields |
| default: |
| return nil |
| } |
| } |
| file_google_genomics_v1_references_proto_msgTypes[1].Exporter = func(v interface{}, i int) interface{} { |
| switch v := v.(*ReferenceSet); i { |
| case 0: |
| return &v.state |
| case 1: |
| return &v.sizeCache |
| case 2: |
| return &v.unknownFields |
| default: |
| return nil |
| } |
| } |
| file_google_genomics_v1_references_proto_msgTypes[2].Exporter = func(v interface{}, i int) interface{} { |
| switch v := v.(*SearchReferenceSetsRequest); i { |
| case 0: |
| return &v.state |
| case 1: |
| return &v.sizeCache |
| case 2: |
| return &v.unknownFields |
| default: |
| return nil |
| } |
| } |
| file_google_genomics_v1_references_proto_msgTypes[3].Exporter = func(v interface{}, i int) interface{} { |
| switch v := v.(*SearchReferenceSetsResponse); i { |
| case 0: |
| return &v.state |
| case 1: |
| return &v.sizeCache |
| case 2: |
| return &v.unknownFields |
| default: |
| return nil |
| } |
| } |
| file_google_genomics_v1_references_proto_msgTypes[4].Exporter = func(v interface{}, i int) interface{} { |
| switch v := v.(*GetReferenceSetRequest); i { |
| case 0: |
| return &v.state |
| case 1: |
| return &v.sizeCache |
| case 2: |
| return &v.unknownFields |
| default: |
| return nil |
| } |
| } |
| file_google_genomics_v1_references_proto_msgTypes[5].Exporter = func(v interface{}, i int) interface{} { |
| switch v := v.(*SearchReferencesRequest); i { |
| case 0: |
| return &v.state |
| case 1: |
| return &v.sizeCache |
| case 2: |
| return &v.unknownFields |
| default: |
| return nil |
| } |
| } |
| file_google_genomics_v1_references_proto_msgTypes[6].Exporter = func(v interface{}, i int) interface{} { |
| switch v := v.(*SearchReferencesResponse); i { |
| case 0: |
| return &v.state |
| case 1: |
| return &v.sizeCache |
| case 2: |
| return &v.unknownFields |
| default: |
| return nil |
| } |
| } |
| file_google_genomics_v1_references_proto_msgTypes[7].Exporter = func(v interface{}, i int) interface{} { |
| switch v := v.(*GetReferenceRequest); i { |
| case 0: |
| return &v.state |
| case 1: |
| return &v.sizeCache |
| case 2: |
| return &v.unknownFields |
| default: |
| return nil |
| } |
| } |
| file_google_genomics_v1_references_proto_msgTypes[8].Exporter = func(v interface{}, i int) interface{} { |
| switch v := v.(*ListBasesRequest); i { |
| case 0: |
| return &v.state |
| case 1: |
| return &v.sizeCache |
| case 2: |
| return &v.unknownFields |
| default: |
| return nil |
| } |
| } |
| file_google_genomics_v1_references_proto_msgTypes[9].Exporter = func(v interface{}, i int) interface{} { |
| switch v := v.(*ListBasesResponse); i { |
| case 0: |
| return &v.state |
| case 1: |
| return &v.sizeCache |
| case 2: |
| return &v.unknownFields |
| default: |
| return nil |
| } |
| } |
| } |
| type x struct{} |
| out := protoimpl.TypeBuilder{ |
| File: protoimpl.DescBuilder{ |
| GoPackagePath: reflect.TypeOf(x{}).PkgPath(), |
| RawDescriptor: file_google_genomics_v1_references_proto_rawDesc, |
| NumEnums: 0, |
| NumMessages: 10, |
| NumExtensions: 0, |
| NumServices: 1, |
| }, |
| GoTypes: file_google_genomics_v1_references_proto_goTypes, |
| DependencyIndexes: file_google_genomics_v1_references_proto_depIdxs, |
| MessageInfos: file_google_genomics_v1_references_proto_msgTypes, |
| }.Build() |
| File_google_genomics_v1_references_proto = out.File |
| file_google_genomics_v1_references_proto_rawDesc = nil |
| file_google_genomics_v1_references_proto_goTypes = nil |
| file_google_genomics_v1_references_proto_depIdxs = nil |
| } |
| |
| // Reference imports to suppress errors if they are not otherwise used. |
| var _ context.Context |
| var _ grpc.ClientConnInterface |
| |
| // This is a compile-time assertion to ensure that this generated file |
| // is compatible with the grpc package it is being compiled against. |
| const _ = grpc.SupportPackageIsVersion6 |
| |
| // ReferenceServiceV1Client is the client API for ReferenceServiceV1 service. |
| // |
| // For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream. |
| type ReferenceServiceV1Client interface { |
| // Searches for reference sets which match the given criteria. |
| // |
| // For the definitions of references and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Implements |
| // [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71) |
| SearchReferenceSets(ctx context.Context, in *SearchReferenceSetsRequest, opts ...grpc.CallOption) (*SearchReferenceSetsResponse, error) |
| // Gets a reference set. |
| // |
| // For the definitions of references and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Implements |
| // [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83). |
| GetReferenceSet(ctx context.Context, in *GetReferenceSetRequest, opts ...grpc.CallOption) (*ReferenceSet, error) |
| // Searches for references which match the given criteria. |
| // |
| // For the definitions of references and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Implements |
| // [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146). |
| SearchReferences(ctx context.Context, in *SearchReferencesRequest, opts ...grpc.CallOption) (*SearchReferencesResponse, error) |
| // Gets a reference. |
| // |
| // For the definitions of references and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Implements |
| // [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158). |
| GetReference(ctx context.Context, in *GetReferenceRequest, opts ...grpc.CallOption) (*Reference, error) |
| // Lists the bases in a reference, optionally restricted to a range. |
| // |
| // For the definitions of references and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Implements |
| // [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221). |
| ListBases(ctx context.Context, in *ListBasesRequest, opts ...grpc.CallOption) (*ListBasesResponse, error) |
| } |
| |
| type referenceServiceV1Client struct { |
| cc grpc.ClientConnInterface |
| } |
| |
| func NewReferenceServiceV1Client(cc grpc.ClientConnInterface) ReferenceServiceV1Client { |
| return &referenceServiceV1Client{cc} |
| } |
| |
| func (c *referenceServiceV1Client) SearchReferenceSets(ctx context.Context, in *SearchReferenceSetsRequest, opts ...grpc.CallOption) (*SearchReferenceSetsResponse, error) { |
| out := new(SearchReferenceSetsResponse) |
| err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/SearchReferenceSets", in, out, opts...) |
| if err != nil { |
| return nil, err |
| } |
| return out, nil |
| } |
| |
| func (c *referenceServiceV1Client) GetReferenceSet(ctx context.Context, in *GetReferenceSetRequest, opts ...grpc.CallOption) (*ReferenceSet, error) { |
| out := new(ReferenceSet) |
| err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/GetReferenceSet", in, out, opts...) |
| if err != nil { |
| return nil, err |
| } |
| return out, nil |
| } |
| |
| func (c *referenceServiceV1Client) SearchReferences(ctx context.Context, in *SearchReferencesRequest, opts ...grpc.CallOption) (*SearchReferencesResponse, error) { |
| out := new(SearchReferencesResponse) |
| err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/SearchReferences", in, out, opts...) |
| if err != nil { |
| return nil, err |
| } |
| return out, nil |
| } |
| |
| func (c *referenceServiceV1Client) GetReference(ctx context.Context, in *GetReferenceRequest, opts ...grpc.CallOption) (*Reference, error) { |
| out := new(Reference) |
| err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/GetReference", in, out, opts...) |
| if err != nil { |
| return nil, err |
| } |
| return out, nil |
| } |
| |
| func (c *referenceServiceV1Client) ListBases(ctx context.Context, in *ListBasesRequest, opts ...grpc.CallOption) (*ListBasesResponse, error) { |
| out := new(ListBasesResponse) |
| err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/ListBases", in, out, opts...) |
| if err != nil { |
| return nil, err |
| } |
| return out, nil |
| } |
| |
| // ReferenceServiceV1Server is the server API for ReferenceServiceV1 service. |
| type ReferenceServiceV1Server interface { |
| // Searches for reference sets which match the given criteria. |
| // |
| // For the definitions of references and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Implements |
| // [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71) |
| SearchReferenceSets(context.Context, *SearchReferenceSetsRequest) (*SearchReferenceSetsResponse, error) |
| // Gets a reference set. |
| // |
| // For the definitions of references and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Implements |
| // [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83). |
| GetReferenceSet(context.Context, *GetReferenceSetRequest) (*ReferenceSet, error) |
| // Searches for references which match the given criteria. |
| // |
| // For the definitions of references and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Implements |
| // [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146). |
| SearchReferences(context.Context, *SearchReferencesRequest) (*SearchReferencesResponse, error) |
| // Gets a reference. |
| // |
| // For the definitions of references and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Implements |
| // [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158). |
| GetReference(context.Context, *GetReferenceRequest) (*Reference, error) |
| // Lists the bases in a reference, optionally restricted to a range. |
| // |
| // For the definitions of references and other genomics resources, see |
| // [Fundamentals of Google |
| // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| // |
| // Implements |
| // [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221). |
| ListBases(context.Context, *ListBasesRequest) (*ListBasesResponse, error) |
| } |
| |
| // UnimplementedReferenceServiceV1Server can be embedded to have forward compatible implementations. |
| type UnimplementedReferenceServiceV1Server struct { |
| } |
| |
| func (*UnimplementedReferenceServiceV1Server) SearchReferenceSets(context.Context, *SearchReferenceSetsRequest) (*SearchReferenceSetsResponse, error) { |
| return nil, status.Errorf(codes.Unimplemented, "method SearchReferenceSets not implemented") |
| } |
| func (*UnimplementedReferenceServiceV1Server) GetReferenceSet(context.Context, *GetReferenceSetRequest) (*ReferenceSet, error) { |
| return nil, status.Errorf(codes.Unimplemented, "method GetReferenceSet not implemented") |
| } |
| func (*UnimplementedReferenceServiceV1Server) SearchReferences(context.Context, *SearchReferencesRequest) (*SearchReferencesResponse, error) { |
| return nil, status.Errorf(codes.Unimplemented, "method SearchReferences not implemented") |
| } |
| func (*UnimplementedReferenceServiceV1Server) GetReference(context.Context, *GetReferenceRequest) (*Reference, error) { |
| return nil, status.Errorf(codes.Unimplemented, "method GetReference not implemented") |
| } |
| func (*UnimplementedReferenceServiceV1Server) ListBases(context.Context, *ListBasesRequest) (*ListBasesResponse, error) { |
| return nil, status.Errorf(codes.Unimplemented, "method ListBases not implemented") |
| } |
| |
| func RegisterReferenceServiceV1Server(s *grpc.Server, srv ReferenceServiceV1Server) { |
| s.RegisterService(&_ReferenceServiceV1_serviceDesc, srv) |
| } |
| |
| func _ReferenceServiceV1_SearchReferenceSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { |
| in := new(SearchReferenceSetsRequest) |
| if err := dec(in); err != nil { |
| return nil, err |
| } |
| if interceptor == nil { |
| return srv.(ReferenceServiceV1Server).SearchReferenceSets(ctx, in) |
| } |
| info := &grpc.UnaryServerInfo{ |
| Server: srv, |
| FullMethod: "/google.genomics.v1.ReferenceServiceV1/SearchReferenceSets", |
| } |
| handler := func(ctx context.Context, req interface{}) (interface{}, error) { |
| return srv.(ReferenceServiceV1Server).SearchReferenceSets(ctx, req.(*SearchReferenceSetsRequest)) |
| } |
| return interceptor(ctx, in, info, handler) |
| } |
| |
| func _ReferenceServiceV1_GetReferenceSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { |
| in := new(GetReferenceSetRequest) |
| if err := dec(in); err != nil { |
| return nil, err |
| } |
| if interceptor == nil { |
| return srv.(ReferenceServiceV1Server).GetReferenceSet(ctx, in) |
| } |
| info := &grpc.UnaryServerInfo{ |
| Server: srv, |
| FullMethod: "/google.genomics.v1.ReferenceServiceV1/GetReferenceSet", |
| } |
| handler := func(ctx context.Context, req interface{}) (interface{}, error) { |
| return srv.(ReferenceServiceV1Server).GetReferenceSet(ctx, req.(*GetReferenceSetRequest)) |
| } |
| return interceptor(ctx, in, info, handler) |
| } |
| |
| func _ReferenceServiceV1_SearchReferences_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { |
| in := new(SearchReferencesRequest) |
| if err := dec(in); err != nil { |
| return nil, err |
| } |
| if interceptor == nil { |
| return srv.(ReferenceServiceV1Server).SearchReferences(ctx, in) |
| } |
| info := &grpc.UnaryServerInfo{ |
| Server: srv, |
| FullMethod: "/google.genomics.v1.ReferenceServiceV1/SearchReferences", |
| } |
| handler := func(ctx context.Context, req interface{}) (interface{}, error) { |
| return srv.(ReferenceServiceV1Server).SearchReferences(ctx, req.(*SearchReferencesRequest)) |
| } |
| return interceptor(ctx, in, info, handler) |
| } |
| |
| func _ReferenceServiceV1_GetReference_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { |
| in := new(GetReferenceRequest) |
| if err := dec(in); err != nil { |
| return nil, err |
| } |
| if interceptor == nil { |
| return srv.(ReferenceServiceV1Server).GetReference(ctx, in) |
| } |
| info := &grpc.UnaryServerInfo{ |
| Server: srv, |
| FullMethod: "/google.genomics.v1.ReferenceServiceV1/GetReference", |
| } |
| handler := func(ctx context.Context, req interface{}) (interface{}, error) { |
| return srv.(ReferenceServiceV1Server).GetReference(ctx, req.(*GetReferenceRequest)) |
| } |
| return interceptor(ctx, in, info, handler) |
| } |
| |
| func _ReferenceServiceV1_ListBases_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { |
| in := new(ListBasesRequest) |
| if err := dec(in); err != nil { |
| return nil, err |
| } |
| if interceptor == nil { |
| return srv.(ReferenceServiceV1Server).ListBases(ctx, in) |
| } |
| info := &grpc.UnaryServerInfo{ |
| Server: srv, |
| FullMethod: "/google.genomics.v1.ReferenceServiceV1/ListBases", |
| } |
| handler := func(ctx context.Context, req interface{}) (interface{}, error) { |
| return srv.(ReferenceServiceV1Server).ListBases(ctx, req.(*ListBasesRequest)) |
| } |
| return interceptor(ctx, in, info, handler) |
| } |
| |
| var _ReferenceServiceV1_serviceDesc = grpc.ServiceDesc{ |
| ServiceName: "google.genomics.v1.ReferenceServiceV1", |
| HandlerType: (*ReferenceServiceV1Server)(nil), |
| Methods: []grpc.MethodDesc{ |
| { |
| MethodName: "SearchReferenceSets", |
| Handler: _ReferenceServiceV1_SearchReferenceSets_Handler, |
| }, |
| { |
| MethodName: "GetReferenceSet", |
| Handler: _ReferenceServiceV1_GetReferenceSet_Handler, |
| }, |
| { |
| MethodName: "SearchReferences", |
| Handler: _ReferenceServiceV1_SearchReferences_Handler, |
| }, |
| { |
| MethodName: "GetReference", |
| Handler: _ReferenceServiceV1_GetReference_Handler, |
| }, |
| { |
| MethodName: "ListBases", |
| Handler: _ReferenceServiceV1_ListBases_Handler, |
| }, |
| }, |
| Streams: []grpc.StreamDesc{}, |
| Metadata: "google/genomics/v1/references.proto", |
| } |
