| // Copyright 2016 Google Inc. |
| // |
| // Licensed under the Apache License, Version 2.0 (the "License"); |
| // you may not use this file except in compliance with the License. |
| // You may obtain a copy of the License at |
| // |
| // http://www.apache.org/licenses/LICENSE-2.0 |
| // |
| // Unless required by applicable law or agreed to in writing, software |
| // distributed under the License is distributed on an "AS IS" BASIS, |
| // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. |
| // See the License for the specific language governing permissions and |
| // limitations under the License. |
| |
| // Code generated by protoc-gen-go. DO NOT EDIT. |
| // versions: |
| // protoc-gen-go v1.22.0 |
| // protoc v3.12.2 |
| // source: google/genomics/v1/readgroup.proto |
| |
| package genomics |
| |
| import ( |
| reflect "reflect" |
| sync "sync" |
| |
| proto "github.com/golang/protobuf/proto" |
| _struct "github.com/golang/protobuf/ptypes/struct" |
| _ "google.golang.org/genproto/googleapis/api/annotations" |
| protoreflect "google.golang.org/protobuf/reflect/protoreflect" |
| protoimpl "google.golang.org/protobuf/runtime/protoimpl" |
| ) |
| |
| const ( |
| // Verify that this generated code is sufficiently up-to-date. |
| _ = protoimpl.EnforceVersion(20 - protoimpl.MinVersion) |
| // Verify that runtime/protoimpl is sufficiently up-to-date. |
| _ = protoimpl.EnforceVersion(protoimpl.MaxVersion - 20) |
| ) |
| |
| // This is a compile-time assertion that a sufficiently up-to-date version |
| // of the legacy proto package is being used. |
| const _ = proto.ProtoPackageIsVersion4 |
| |
| // A read group is all the data that's processed the same way by the sequencer. |
| type ReadGroup struct { |
| state protoimpl.MessageState |
| sizeCache protoimpl.SizeCache |
| unknownFields protoimpl.UnknownFields |
| |
| // The server-generated read group ID, unique for all read groups. |
| // Note: This is different than the @RG ID field in the SAM spec. For that |
| // value, see [name][google.genomics.v1.ReadGroup.name]. |
| Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"` |
| // The dataset to which this read group belongs. |
| DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"` |
| // The read group name. This corresponds to the @RG ID field in the SAM spec. |
| Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"` |
| // A free-form text description of this read group. |
| Description string `protobuf:"bytes,4,opt,name=description,proto3" json:"description,omitempty"` |
| // A client-supplied sample identifier for the reads in this read group. |
| SampleId string `protobuf:"bytes,5,opt,name=sample_id,json=sampleId,proto3" json:"sample_id,omitempty"` |
| // The experiment used to generate this read group. |
| Experiment *ReadGroup_Experiment `protobuf:"bytes,6,opt,name=experiment,proto3" json:"experiment,omitempty"` |
| // The predicted insert size of this read group. The insert size is the length |
| // the sequenced DNA fragment from end-to-end, not including the adapters. |
| PredictedInsertSize int32 `protobuf:"varint,7,opt,name=predicted_insert_size,json=predictedInsertSize,proto3" json:"predicted_insert_size,omitempty"` |
| // The programs used to generate this read group. Programs are always |
| // identical for all read groups within a read group set. For this reason, |
| // only the first read group in a returned set will have this field |
| // populated. |
| Programs []*ReadGroup_Program `protobuf:"bytes,10,rep,name=programs,proto3" json:"programs,omitempty"` |
| // The reference set the reads in this read group are aligned to. |
| ReferenceSetId string `protobuf:"bytes,11,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"` |
| // A map of additional read group information. This must be of the form |
| // map<string, string[]> (string key mapping to a list of string values). |
| Info map[string]*_struct.ListValue `protobuf:"bytes,12,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"` |
| } |
| |
| func (x *ReadGroup) Reset() { |
| *x = ReadGroup{} |
| if protoimpl.UnsafeEnabled { |
| mi := &file_google_genomics_v1_readgroup_proto_msgTypes[0] |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| ms.StoreMessageInfo(mi) |
| } |
| } |
| |
| func (x *ReadGroup) String() string { |
| return protoimpl.X.MessageStringOf(x) |
| } |
| |
| func (*ReadGroup) ProtoMessage() {} |
| |
| func (x *ReadGroup) ProtoReflect() protoreflect.Message { |
| mi := &file_google_genomics_v1_readgroup_proto_msgTypes[0] |
| if protoimpl.UnsafeEnabled && x != nil { |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| if ms.LoadMessageInfo() == nil { |
| ms.StoreMessageInfo(mi) |
| } |
| return ms |
| } |
| return mi.MessageOf(x) |
| } |
| |
| // Deprecated: Use ReadGroup.ProtoReflect.Descriptor instead. |
| func (*ReadGroup) Descriptor() ([]byte, []int) { |
| return file_google_genomics_v1_readgroup_proto_rawDescGZIP(), []int{0} |
| } |
| |
| func (x *ReadGroup) GetId() string { |
| if x != nil { |
| return x.Id |
| } |
| return "" |
| } |
| |
| func (x *ReadGroup) GetDatasetId() string { |
| if x != nil { |
| return x.DatasetId |
| } |
| return "" |
| } |
| |
| func (x *ReadGroup) GetName() string { |
| if x != nil { |
| return x.Name |
| } |
| return "" |
| } |
| |
| func (x *ReadGroup) GetDescription() string { |
| if x != nil { |
| return x.Description |
| } |
| return "" |
| } |
| |
| func (x *ReadGroup) GetSampleId() string { |
| if x != nil { |
| return x.SampleId |
| } |
| return "" |
| } |
| |
| func (x *ReadGroup) GetExperiment() *ReadGroup_Experiment { |
| if x != nil { |
| return x.Experiment |
| } |
| return nil |
| } |
| |
| func (x *ReadGroup) GetPredictedInsertSize() int32 { |
| if x != nil { |
| return x.PredictedInsertSize |
| } |
| return 0 |
| } |
| |
| func (x *ReadGroup) GetPrograms() []*ReadGroup_Program { |
| if x != nil { |
| return x.Programs |
| } |
| return nil |
| } |
| |
| func (x *ReadGroup) GetReferenceSetId() string { |
| if x != nil { |
| return x.ReferenceSetId |
| } |
| return "" |
| } |
| |
| func (x *ReadGroup) GetInfo() map[string]*_struct.ListValue { |
| if x != nil { |
| return x.Info |
| } |
| return nil |
| } |
| |
| type ReadGroup_Experiment struct { |
| state protoimpl.MessageState |
| sizeCache protoimpl.SizeCache |
| unknownFields protoimpl.UnknownFields |
| |
| // A client-supplied library identifier; a library is a collection of DNA |
| // fragments which have been prepared for sequencing from a sample. This |
| // field is important for quality control as error or bias can be introduced |
| // during sample preparation. |
| LibraryId string `protobuf:"bytes,1,opt,name=library_id,json=libraryId,proto3" json:"library_id,omitempty"` |
| // The platform unit used as part of this experiment, for example |
| // flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the |
| // @RG PU field in the SAM spec. |
| PlatformUnit string `protobuf:"bytes,2,opt,name=platform_unit,json=platformUnit,proto3" json:"platform_unit,omitempty"` |
| // The sequencing center used as part of this experiment. |
| SequencingCenter string `protobuf:"bytes,3,opt,name=sequencing_center,json=sequencingCenter,proto3" json:"sequencing_center,omitempty"` |
| // The instrument model used as part of this experiment. This maps to |
| // sequencing technology in the SAM spec. |
| InstrumentModel string `protobuf:"bytes,4,opt,name=instrument_model,json=instrumentModel,proto3" json:"instrument_model,omitempty"` |
| } |
| |
| func (x *ReadGroup_Experiment) Reset() { |
| *x = ReadGroup_Experiment{} |
| if protoimpl.UnsafeEnabled { |
| mi := &file_google_genomics_v1_readgroup_proto_msgTypes[1] |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| ms.StoreMessageInfo(mi) |
| } |
| } |
| |
| func (x *ReadGroup_Experiment) String() string { |
| return protoimpl.X.MessageStringOf(x) |
| } |
| |
| func (*ReadGroup_Experiment) ProtoMessage() {} |
| |
| func (x *ReadGroup_Experiment) ProtoReflect() protoreflect.Message { |
| mi := &file_google_genomics_v1_readgroup_proto_msgTypes[1] |
| if protoimpl.UnsafeEnabled && x != nil { |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| if ms.LoadMessageInfo() == nil { |
| ms.StoreMessageInfo(mi) |
| } |
| return ms |
| } |
| return mi.MessageOf(x) |
| } |
| |
| // Deprecated: Use ReadGroup_Experiment.ProtoReflect.Descriptor instead. |
| func (*ReadGroup_Experiment) Descriptor() ([]byte, []int) { |
| return file_google_genomics_v1_readgroup_proto_rawDescGZIP(), []int{0, 0} |
| } |
| |
| func (x *ReadGroup_Experiment) GetLibraryId() string { |
| if x != nil { |
| return x.LibraryId |
| } |
| return "" |
| } |
| |
| func (x *ReadGroup_Experiment) GetPlatformUnit() string { |
| if x != nil { |
| return x.PlatformUnit |
| } |
| return "" |
| } |
| |
| func (x *ReadGroup_Experiment) GetSequencingCenter() string { |
| if x != nil { |
| return x.SequencingCenter |
| } |
| return "" |
| } |
| |
| func (x *ReadGroup_Experiment) GetInstrumentModel() string { |
| if x != nil { |
| return x.InstrumentModel |
| } |
| return "" |
| } |
| |
| type ReadGroup_Program struct { |
| state protoimpl.MessageState |
| sizeCache protoimpl.SizeCache |
| unknownFields protoimpl.UnknownFields |
| |
| // The command line used to run this program. |
| CommandLine string `protobuf:"bytes,1,opt,name=command_line,json=commandLine,proto3" json:"command_line,omitempty"` |
| // The user specified locally unique ID of the program. Used along with |
| // `prevProgramId` to define an ordering between programs. |
| Id string `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"` |
| // The display name of the program. This is typically the colloquial name of |
| // the tool used, for example 'bwa' or 'picard'. |
| Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"` |
| // The ID of the program run before this one. |
| PrevProgramId string `protobuf:"bytes,4,opt,name=prev_program_id,json=prevProgramId,proto3" json:"prev_program_id,omitempty"` |
| // The version of the program run. |
| Version string `protobuf:"bytes,5,opt,name=version,proto3" json:"version,omitempty"` |
| } |
| |
| func (x *ReadGroup_Program) Reset() { |
| *x = ReadGroup_Program{} |
| if protoimpl.UnsafeEnabled { |
| mi := &file_google_genomics_v1_readgroup_proto_msgTypes[2] |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| ms.StoreMessageInfo(mi) |
| } |
| } |
| |
| func (x *ReadGroup_Program) String() string { |
| return protoimpl.X.MessageStringOf(x) |
| } |
| |
| func (*ReadGroup_Program) ProtoMessage() {} |
| |
| func (x *ReadGroup_Program) ProtoReflect() protoreflect.Message { |
| mi := &file_google_genomics_v1_readgroup_proto_msgTypes[2] |
| if protoimpl.UnsafeEnabled && x != nil { |
| ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) |
| if ms.LoadMessageInfo() == nil { |
| ms.StoreMessageInfo(mi) |
| } |
| return ms |
| } |
| return mi.MessageOf(x) |
| } |
| |
| // Deprecated: Use ReadGroup_Program.ProtoReflect.Descriptor instead. |
| func (*ReadGroup_Program) Descriptor() ([]byte, []int) { |
| return file_google_genomics_v1_readgroup_proto_rawDescGZIP(), []int{0, 1} |
| } |
| |
| func (x *ReadGroup_Program) GetCommandLine() string { |
| if x != nil { |
| return x.CommandLine |
| } |
| return "" |
| } |
| |
| func (x *ReadGroup_Program) GetId() string { |
| if x != nil { |
| return x.Id |
| } |
| return "" |
| } |
| |
| func (x *ReadGroup_Program) GetName() string { |
| if x != nil { |
| return x.Name |
| } |
| return "" |
| } |
| |
| func (x *ReadGroup_Program) GetPrevProgramId() string { |
| if x != nil { |
| return x.PrevProgramId |
| } |
| return "" |
| } |
| |
| func (x *ReadGroup_Program) GetVersion() string { |
| if x != nil { |
| return x.Version |
| } |
| return "" |
| } |
| |
| var File_google_genomics_v1_readgroup_proto protoreflect.FileDescriptor |
| |
| var file_google_genomics_v1_readgroup_proto_rawDesc = []byte{ |
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| } |
| |
| var ( |
| file_google_genomics_v1_readgroup_proto_rawDescOnce sync.Once |
| file_google_genomics_v1_readgroup_proto_rawDescData = file_google_genomics_v1_readgroup_proto_rawDesc |
| ) |
| |
| func file_google_genomics_v1_readgroup_proto_rawDescGZIP() []byte { |
| file_google_genomics_v1_readgroup_proto_rawDescOnce.Do(func() { |
| file_google_genomics_v1_readgroup_proto_rawDescData = protoimpl.X.CompressGZIP(file_google_genomics_v1_readgroup_proto_rawDescData) |
| }) |
| return file_google_genomics_v1_readgroup_proto_rawDescData |
| } |
| |
| var file_google_genomics_v1_readgroup_proto_msgTypes = make([]protoimpl.MessageInfo, 4) |
| var file_google_genomics_v1_readgroup_proto_goTypes = []interface{}{ |
| (*ReadGroup)(nil), // 0: google.genomics.v1.ReadGroup |
| (*ReadGroup_Experiment)(nil), // 1: google.genomics.v1.ReadGroup.Experiment |
| (*ReadGroup_Program)(nil), // 2: google.genomics.v1.ReadGroup.Program |
| nil, // 3: google.genomics.v1.ReadGroup.InfoEntry |
| (*_struct.ListValue)(nil), // 4: google.protobuf.ListValue |
| } |
| var file_google_genomics_v1_readgroup_proto_depIdxs = []int32{ |
| 1, // 0: google.genomics.v1.ReadGroup.experiment:type_name -> google.genomics.v1.ReadGroup.Experiment |
| 2, // 1: google.genomics.v1.ReadGroup.programs:type_name -> google.genomics.v1.ReadGroup.Program |
| 3, // 2: google.genomics.v1.ReadGroup.info:type_name -> google.genomics.v1.ReadGroup.InfoEntry |
| 4, // 3: google.genomics.v1.ReadGroup.InfoEntry.value:type_name -> google.protobuf.ListValue |
| 4, // [4:4] is the sub-list for method output_type |
| 4, // [4:4] is the sub-list for method input_type |
| 4, // [4:4] is the sub-list for extension type_name |
| 4, // [4:4] is the sub-list for extension extendee |
| 0, // [0:4] is the sub-list for field type_name |
| } |
| |
| func init() { file_google_genomics_v1_readgroup_proto_init() } |
| func file_google_genomics_v1_readgroup_proto_init() { |
| if File_google_genomics_v1_readgroup_proto != nil { |
| return |
| } |
| if !protoimpl.UnsafeEnabled { |
| file_google_genomics_v1_readgroup_proto_msgTypes[0].Exporter = func(v interface{}, i int) interface{} { |
| switch v := v.(*ReadGroup); i { |
| case 0: |
| return &v.state |
| case 1: |
| return &v.sizeCache |
| case 2: |
| return &v.unknownFields |
| default: |
| return nil |
| } |
| } |
| file_google_genomics_v1_readgroup_proto_msgTypes[1].Exporter = func(v interface{}, i int) interface{} { |
| switch v := v.(*ReadGroup_Experiment); i { |
| case 0: |
| return &v.state |
| case 1: |
| return &v.sizeCache |
| case 2: |
| return &v.unknownFields |
| default: |
| return nil |
| } |
| } |
| file_google_genomics_v1_readgroup_proto_msgTypes[2].Exporter = func(v interface{}, i int) interface{} { |
| switch v := v.(*ReadGroup_Program); i { |
| case 0: |
| return &v.state |
| case 1: |
| return &v.sizeCache |
| case 2: |
| return &v.unknownFields |
| default: |
| return nil |
| } |
| } |
| } |
| type x struct{} |
| out := protoimpl.TypeBuilder{ |
| File: protoimpl.DescBuilder{ |
| GoPackagePath: reflect.TypeOf(x{}).PkgPath(), |
| RawDescriptor: file_google_genomics_v1_readgroup_proto_rawDesc, |
| NumEnums: 0, |
| NumMessages: 4, |
| NumExtensions: 0, |
| NumServices: 0, |
| }, |
| GoTypes: file_google_genomics_v1_readgroup_proto_goTypes, |
| DependencyIndexes: file_google_genomics_v1_readgroup_proto_depIdxs, |
| MessageInfos: file_google_genomics_v1_readgroup_proto_msgTypes, |
| }.Build() |
| File_google_genomics_v1_readgroup_proto = out.File |
| file_google_genomics_v1_readgroup_proto_rawDesc = nil |
| file_google_genomics_v1_readgroup_proto_goTypes = nil |
| file_google_genomics_v1_readgroup_proto_depIdxs = nil |
| } |
