#!/usr/bin/env python
# -*- Python -*-

import spec


class SPEC2006_456_hmmer(spec.TestModule):
    year = "2006"
    category = "int"
    benchmark = "456.hmmer"

    train_input_set = ["train/input/leng100.hmm"]
    train_output_set = ["train/output/leng100.out"]
    train_args = [
        "--fixed 0 --mean 325 --num 5000 --sd 200 --seed 0 leng100.hmm > 456.hmmer.leng100.out 2> 456.hmmer.leng100.err"
    ]
    train_cmp_cmds = [
        "diff 456.hmmer.leng100.out leng100.out --strip-trailing-cr > 456.hmmer.leng100.cmp"
    ]
    ref_input_set = ["ref/input/nph3.hmm", "ref/input/swiss41", "ref/input/retro.hmm"]
    ref_output_set = ["ref/output/nph3.out", "ref/output/retro.out"]
    ref_args = [
        "nph3.hmm swiss41 > 456.hmmer.nph3.out 2> 456.hmmer.nph3.err",
        "--fixed 0 --mean 500 --num 500000 --sd 350 --seed 0 retro.hmm > 456.hmmer.retro.out 2> 456.hmmer.retro.err",
    ]
    ref_cmp_cmds = [
        "diff 456.hmmer.nph3.out nph3.out --strip-trailing-cr > 456.hmmer.nph3.cmp",
        "diff 456.hmmer.retro.out retro.out --strip-trailing-cr > 456.hmmer.retro.cmp",
    ]


# This is the only required entry point to the module.
test_class = SPEC2006_456_hmmer

# This is not required, but allows users with LNT in the environment (required
# for initial imports to work) to execute this test directly.
if __name__ == "__main__":
    test_class().main()