| /* $Id$ |
| * |
| * Christian Iseli, LICR ITO, Christian.Iseli@licr.org |
| * |
| * Copyright (c) 2001-2004 Swiss Institute of Bioinformatics. |
| * Copyright (C) 1998-2001 Liliana Florea. |
| */ |
| |
| #ifndef SIM4B1_H |
| #define SIM4B1_H |
| |
| extern int encoding[NACHARS]; |
| #define CODE_CNT 5 |
| |
| void free_align(edit_script_list_p_t); |
| void print_exons(collec_p_t, int); |
| void SIM4(hash_env_p_t, seq_p_t, collec_p_t); |
| void init_encoding(void); |
| void init_hash_env(hash_env_p_t, unsigned int, uchar *, unsigned int); |
| void free_hash_env(hash_env_p_t); |
| void bld_table(hash_env_p_t); |
| void init_col(collec_p_t, unsigned int); |
| #endif /* SIM4B1_H */ |
